Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gekko_20japonicus_20[refseq_20GCF_5F001447785.1_202015-11-25] 191,500 sequences; 2,490,274,461 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq22844 183 6e-44 seq10288 183 6e-44 seq7874 93.3 8e-17 seq15753 80.6 5e-13 >seq22844 Length=10872 Score = 183 bits (202), Expect = 6e-44 Identities = 208/275 (76%), Gaps = 3/275 (1%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTT 98 |||| ||| |||| |||| | |||| || | ||||||||||||||||||||||||| Sbjct 1243 ATGCTCTTAACTGAGTGTCCTGGGGGTCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTT 1184 Query 99 CAAAGCAGGCCTTT-GCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTC 157 ||||||||||| | || |||||| ||| |||||||| ||||||||| | |||||| Sbjct 1183 CAAAGCAGGCCGGTCGCCGGAATACTCCAGCTAGGAATAATGGAATAGGAC-TCCGGTTC 1125 Query 158 TATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTA 217 |||||||||||||| | || | | |||||||| ||||| | |||||| | ||| Sbjct 1124 TATTTTGTTGGTTTTCGGAACTGGGGCCATGATTAAGAGGGACGGCCGGGGGCATTCGTA 1065 Query 218 TTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTC 277 || | |||||||||||||||||| ||||| || | |||||||| || Sbjct 1064 TTGTGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCATTT 1005 Query 278 ACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 ||||| |||||||||||||||| |||||||||| Sbjct 1004 GCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 971 >seq10288 Length=20680 Score = 183 bits (202), Expect = 6e-44 Identities = 208/275 (76%), Gaps = 3/275 (1%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTT 98 |||| ||| |||| |||| | |||| || | ||||||||||||||||||||||||| Sbjct 10261 ATGCTCTTAACTGAGTGTCCTGGGGGTCCGAAGCGTTTACTTTGAAAAAATTAGAGTGTT 10202 Query 99 CAAAGCAGGCCTTT-GCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTC 157 ||||||||||| | || |||||| ||| |||||||| ||||||||| | |||||| Sbjct 10201 CAAAGCAGGCCGGTCGCCGGAATACTCCAGCTAGGAATAATGGAATAGGAC-TCCGGTTC 10143 Query 158 TATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTA 217 |||||||||||||| | || | | |||||||| ||||| | |||||| | ||| Sbjct 10142 TATTTTGTTGGTTTTCGGAACTGGGGCCATGATTAAGAGGGACGGCCGGGGGCATTCGTA 10083 Query 218 TTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTC 277 || | |||||||||||||||||| ||||| || | |||||||| || Sbjct 10082 TTGTGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCATTT 10023 Query 278 ACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 ||||| |||||||||||||||| |||||||||| Sbjct 10022 GCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 9989 >seq7874 Length=439979 Score = 93.3 bits (102), Expect = 8e-17 Identities = 144/203 (71%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 44 CTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAG 103 ||| |||| |||| | |||| || | ||||||||||||||| |||||||||| ||| Sbjct 106339 CTTAACTGAGTGTCCTGGGGGTCCGAAATGTTTACTTTGAAAAAAATAGAGTGTTCGAAG 106398 Query 104 CAGGC-CTTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTT 162 ||||| | || |||||| | | ||| |||| ||||||||| | |||||||||| Sbjct 106399 CAGGCTAGTAGCCGGAATACTCCATCTAGGACTAATGGAATAGGAC-TTTGGTTCTATTT 106457 Query 163 TGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAA 222 || | ||| | | || | || | ||| ||||| || | || | | |||| Sbjct 106458 TGGTTTTTTTTGGAACTGGAGTCA----TAAGAGGGACAGCCAGGAGCATTTATATTGTG 106513 Query 223 TTGTCAGAGGTGAAATTCTTGGA 245 ||| |||||||||||||||||| Sbjct 106514 CTGTTAGAGGTGAAATTCTTGGA 106536 >seq15753 Length=167721 Score = 80.6 bits (88), Expect = 5e-13 Identities = 144/204 (71%), Gaps = 11/204 (5%) Strand=Plus/Minus Query 117 GAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGG 176 |||||| ||| |||||||| ||||||| | | | |||||||||||||||||| || Sbjct 12200 GAATACTCCAGCTAGGAATAATGGAATAGGCC-TCCAGTTCTATTTTGTTGGTTTTCAGC 12142 Query 177 ACCGCCGTAATGATTAATAGGGATAGTCGGGGG----TGTCAGTATTCAATTGTCAGAGG 232 | || | |||||||| ||||| | ||||| ||| || | | | | || || Sbjct 12141 ATCGGGGCCATGATTAAGCGGGATGGCTGGGGGCATTTGT-GGTGTGCCACT---AGGGG 12086 Query 233 TGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTT- 291 ||||||||||||| | ||||| || | | |||||| || ||||| || |||| Sbjct 12085 TGAAATTCTTGGACTGGCGCAAGACGGACCAGAGAGAAAGCATTTGCCAAGAATTTTTTC 12026 Query 292 CATTAATCAGTGAACGAAAGTTAG 315 ||||||||| || |||||| || Sbjct 12025 CATTAATCA-AGATTGAAAGTCAG 12003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 913447392000