Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gekko_20japonicus_20[refseq_20GCF_5F001447785.1_202015-11-25] 191,500 sequences; 2,490,274,461 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq12422 145 3e-32 seq11187 122 4e-25 seq6716 107 8e-21 seq2782 100 1e-18 seq1703 100 1e-18 seq14564 91.5 6e-16 seq9481 89.7 2e-15 seq16798 77.0 1e-11 >seq12422 Length=122834 Score = 145 bits (160), Expect = 3e-32 Identities = 101/115 (88%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 92371 GGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGA 92312 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || || |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 92311 GGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 92257 Score = 122 bits (134), Expect = 4e-25 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 93267 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 93208 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||| ||||||| || | ||||| ||||||| |||||| | Sbjct 93207 ACCGGCACGAGACCGATAGTCGACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAG 93148 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || ||||||| ||| | ||| || || Sbjct 93147 AGAGAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAAACG 93108 >seq11187 Length=1307109 Score = 122 bits (134), Expect = 4e-25 Identities = 91/107 (85%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 577 AAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCA 636 |||||||||||||||||||| |||| |||||||||||||||||||||||||| || | Sbjct 540316 AAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGAGGTCCGTA 540375 Query 637 GCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || || ||| |||| |||||| ||||| | ||||||||||||||| Sbjct 540376 GCAGTCCTGACGTGAAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 540422 >seq6716 Length=1631388 Score = 107 bits (118), Expect = 8e-21 Identities = 91/112 (81%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||||||||||||| ||| ||||||| || |||||||||||||||| ||||||||| Sbjct 376716 GGACCCGAAAGATGGTAAACAATGCCTGGGCAGAGTGAAGCCAGAGGAAATTCTGGTGGA 376775 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGG 680 || | || ||||||| ||||||||| || || | |||||||||||| Sbjct 376776 GGTCCATAGTGGTTCTGACGTGCAAATTAGTCATCTGACCTGGGTATAGGGG 376827 >seq2782 Length=1147223 Score = 100 bits (110), Expect = 1e-18 Identities = 118/160 (74%), Gaps = 6/160 (4%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | ||| | ||||||| Sbjct 907261 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGTGGCTGGTAAACTCCATCTGAGGCTAAAT 907202 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||||||||||| ||||||| | | ||||| ||||||| ||||| | Sbjct 907201 AC------GAGACCGATAGTCGACAAGTACCATAAGGGAAAGTTGAAAAGACCTTTGAAG 907148 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || ||||||| |||| | ||| || || Sbjct 907147 AGAGAGTTCAAGAGGGCGTGAAACTGTTAAGAGGTAAACG 907108 >seq1703 Length=1400373 Score = 100 bits (110), Expect = 1e-18 Identities = 118/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| |||||||||||| | || ||| ||| || | | ||||| ||||||| Sbjct 1120680 GAGTCGGGTTGCTTGGGAATGCAGTCCAAAGCGGGTGGTGAACTCCATCTAAGGCTAAAT 1120621 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||| ||||| |||||| || | ||||| ||||||| |||||||| Sbjct 1120620 ACCGGCAGGAGACTGATAGTCGGCAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGGAG 1120561 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || | | ||| ||| | ||| || || Sbjct 1120560 AGAGAGTTCAAGAGGGCATAAAACCGTTAAGAGGTAAACG 1120521 >seq14564 Length=2038252 Score = 91.5 bits (100), Expect = 6e-16 Identities = 74/90 (82%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 592 GCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGC 651 ||||| ||||||||||||||||||||||||||||||| | ||| || ||| ||||| Sbjct 959826 GCCTGGGCAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGTCCATAGCAGTCCTGACGTGC 959767 Query 652 AAATCGATCGTCAAATTTGGGTATAGGGGC 681 |||||| || || | ||||||||||||| Sbjct 959766 AAATCGGTCATCCGACCTGGGTATAGGGGC 959737 >seq9481 Length=962283 Score = 89.7 bits (98), Expect = 2e-15 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 563 CTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCT 622 ||| | || ||||||||||||||||||||||||| |||| ||||||||||||| ||| Sbjct 508923 CTGCTAGGGCCCGAAAGATGGTGAACTATGCCTGGGCAGGGCAAAGCCAGAGGAAAGTCT 508864 Query 623 GGTGGAGGCTCGCAGCGGT 641 ||||||||| || || ||| Sbjct 508863 GGTGGAGGCCCGTAGTGGT 508845 >seq16798 Length=378709 Score = 77.0 bits (84), Expect = 1e-11 Identities = 96/131 (73%), Gaps = 3/131 (2%) Strand=Plus/Plus Query 72 GGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAG 131 ||| |||||| | | ||||| |||||||| ||| ||||||||||| ||||||| | Sbjct 636 GGGTGGTAAACTCCATCTAAGGCTAAATACCGGCACGAGACCGATAGTCGACAAGTACCG 695 Query 132 TGATCGAAAGATGAAAAGCACTTTGGAAAG---AGAGTTAAAAAGCACGTGAAATTGTTG 188 | | ||||| ||||||| |||||| | || ||||| || || ||||||| ||| Sbjct 696 TAAGGGAAAGTTGAAAAGAACTTTGAAGAGAGAAGAGTGCAAGAGGGCGTGAAACCGTTA 755 Query 189 AAAGGGAAGCG 199 | ||| || || Sbjct 756 AGAGGTAAACG 766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2075892325000