Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gekko_20japonicus_20[refseq_20GCF_5F001447785.1_202015-11-25] 191,500 sequences; 2,490,274,461 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq39048 86.0 4e-15 seq22844 86.0 4e-15 seq10288 86.0 4e-15 seq13972 82.4 5e-14 seq6805 82.4 5e-14 seq16264 80.6 2e-13 seq26966 77.0 2e-12 seq2849 77.0 2e-12 seq8942 71.6 8e-11 >seq39048 Length=1979 Score = 86.0 bits (94), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 631 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 574 Query 109 TAATACAACGCAAGCT 124 |||| |||||| |||| Sbjct 573 TAAT-CAACGCGAGCT 559 >seq22844 Length=10872 Score = 86.0 bits (94), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 ||||||||||||| || ||||||||| |||| |||||| ||||||||||||||||||| Sbjct 498 CTCACTAAGCCATC-CAATCGGTAGTA-GCGATGGGCGGTGTGTACAAAGGGCAGGGACT 555 Query 109 TAATACAACGCAAGCT 124 |||| |||||| |||| Sbjct 556 TAAT-CAACGCGAGCT 570 >seq10288 Length=20680 Score = 86.0 bits (94), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 9294 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 9351 Query 109 TAATACAACGCAAGCT 124 |||| |||||| |||| Sbjct 9352 TAAT-CAACGCGAGCT 9366 >seq13972 Length=1363976 Score = 82.4 bits (90), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || || |||||| ||||||||||| ||||||||||||||||||| Sbjct 481991 CTCACTAAACCATC-CAATCTGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 482048 Query 109 TAATACAACGCAAGCT 124 |||| |||||| |||| Sbjct 482049 TAAT-CAACGCGAGCT 482063 >seq6805 Length=185010 Score = 82.4 bits (90), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 3/76 (4%) Strand=Plus/Plus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||||| ||||||||||| ||||||||||||||||||| Sbjct 162227 CTCACTAAACCATC-CAATCGGTAGTA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACT 162284 Query 109 TAATACAACGCAAGCT 124 | || |||||| |||| Sbjct 162285 TCAT-CAACGCGAGCT 162299 >seq16264 Length=1824003 Score = 80.6 bits (88), Expect = 2e-13 Identities = 81/99 (82%), Gaps = 5/99 (5%) Strand=Plus/Minus Query 26 CCACAAAGCCAATTCCGAAAGTTCTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGC 85 ||||| ||||| ||||| | |||||||| |||| ||| ||||||| ||||||||| Sbjct 1604838 CCACAGTTCCAAT-CCGAA-GACCTCACTAAACCATCCAATT-GGTAGTA-GCGACGGGC 1604783 Query 86 GGGGTGTACAAAGGGCAGGGACGTAATACAACGCAAGCT 124 || ||||||||||||||||||| |||| ||||| |||| Sbjct 1604782 GGTGTGTACAAAGGGCAGGGACTTAAT-CAACGTGAGCT 1604745 >seq26966 Length=1198 Score = 77.0 bits (84), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||| | ||||||||| | ||||||||||||||||||| Sbjct 704 CTCACTAAACCATC-CAATCGGTAGCA-GCGACGGGCAGTGTGTACAAAGGGCAGGGACT 647 Query 109 TAATACAACGCAAGCT 124 |||| |||||| |||| Sbjct 646 TAAT-CAACGCGAGCT 632 >seq2849 Length=231113 Score = 77.0 bits (84), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 3/76 (4%) Strand=Plus/Minus Query 49 CTCACTAAGCCATTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACG 108 |||||||| |||| || ||||||| | ||||||||| | ||||||||||||||||||| Sbjct 20260 CTCACTAAACCATC-CAATCGGTAGCA-GCGACGGGCAGTGTGTACAAAGGGCAGGGACT 20203 Query 109 TAATACAACGCAAGCT 124 |||| |||||| |||| Sbjct 20202 TAAT-CAACGCGAGCT 20188 >seq8942 Length=4309065 Score = 71.6 bits (78), Expect = 8e-11 Identities = 52/58 (90%), Gaps = 2/58 (3%) Strand=Plus/Minus Query 67 TCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAAGCT 124 ||||||||| ||||||||| | ||||||||||||||||||| |||| |||||| |||| Sbjct 2248873 TCGGTAGTA-GCGACGGGCAGTGTGTACAAAGGGCAGGGACTTAAT-CAACGCGAGCT 2248818 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300259970000