Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gekko_20japonicus_20[refseq_20GCF_5F001447785.1_202015-11-25] 191,500 sequences; 2,490,274,461 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq7841 109 9e-22 seq11950 104 4e-20 seq28 104 4e-20 seq10580 100 5e-19 seq520 80.6 4e-13 seq13980 78.8 2e-12 seq4490 78.8 2e-12 seq12295 75.2 2e-11 seq9497 75.2 2e-11 >seq7841 Length=1013159 Score = 109 bits (120), Expect = 9e-22 Identities = 94/114 (82%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||||| |||||| | ||||| | || | || |||| || || | Sbjct 339772 GTACGAGAGGAACCGCGGT-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 339715 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 339714 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 339661 >seq11950 Length=55752 Score = 104 bits (114), Expect = 4e-20 Identities = 93/114 (82%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 16907 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 16964 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 16965 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 17018 Score = 82.4 bits (90), Expect = 1e-13 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 45 TGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAA 104 || |||| || || || |||||||||||||||| |||||||| |||||||||||||| Sbjct 41533 TGGCTGAGGAGCCAATGGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAA 41592 Query 105 GTCAGAATCC 114 |||||||||| Sbjct 41593 GTCAGAATCC 41602 Score = 73.4 bits (80), Expect = 6e-11 Identities = 79/102 (77%), Gaps = 2/102 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||| ||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 48343 GTACAAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 48400 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCT 102 | || ||||||||||||| |||||||| |||||||||||| Sbjct 48401 GGGGCAAAGCTACCATCTGTGGGATTATGACTGAACGCCTCT 48442 >seq28 Length=779876 Score = 104 bits (114), Expect = 4e-20 Identities = 93/114 (82%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 253467 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 253524 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 253525 GGGGCGAAGCTACCATCTGAGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 253578 >seq10580 Length=1022959 Score = 100 bits (110), Expect = 5e-19 Identities = 92/114 (81%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 229460 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 229403 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| ||||| |||||||||||||||||| Sbjct 229402 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAATGCCTCTAAGTCAGAATCC 229349 >seq520 Length=869937 Score = 80.6 bits (88), Expect = 4e-13 Identities = 68/84 (81%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 31 TTGGTTTTTGCGGCTGTCTGACCAGGCAGTGCCGCGAAGCTACCATCTGCTGGATTATGG 90 ||||| | || | || |||| || || || |||||||||||||||| |||||||| Sbjct 27872 TTGGTGTATGTGCTTGGCTGAGGAGCCAATGGGGCGAAGCTACCATCTGTGGGATTATGA 27931 Query 91 CTGAACGCCTCTAAGTCAGAATCC 114 ||||| |||||||||||||||||| Sbjct 27932 CTGAATGCCTCTAAGTCAGAATCC 27955 >seq13980 Length=1017554 Score = 78.8 bits (86), Expect = 2e-12 Identities = 88/114 (77%), Gaps = 4/114 (4%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| |||||||||| | | |||||| || ||||| | || | ||||||| || || | Sbjct 34735 GTATGAGAGGAACCACAGG-TTCAGA-TATTTGGTGTATGTGCTTGTCTGAGGAGCCAAT 34678 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | || |||||||||||| ||||||||| ||||| ||||| |||||||||| Sbjct 34677 GGGGCAAAGCTACCATCTTTTGGATTATGACTGAATACCTCT--GTCAGAATCC 34626 >seq4490 Length=938659 Score = 78.8 bits (86), Expect = 2e-12 Identities = 88/114 (77%), Gaps = 3/114 (3%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||| ||| | |||||| | ||||| | | | || |||| || || | Sbjct 22860 GTACGAGAGGAAACGCAGG-TTCAGAC-ATTTGGTATAGGTGCTTGGCTGAGGAGCCAAT 22917 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | || ||||| ||||||| |||||||| ||||| |||||||||||||||||| Sbjct 22918 GGGGCAAAGCTGCCATCTGTAGGATTATGACTGAA-GCCTCTAAGTCAGAATCC 22970 >seq12295 Length=2079112 Score = 75.2 bits (82), Expect = 2e-11 Identities = 47/51 (92%), Gaps = 0/51 (0%) Strand=Plus/Minus Query 64 GCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 |||||||||||||||| ||||| || |||||||||||||||||||||||| Sbjct 1174654 GCGAAGCTACCATCTGTGGGATTGTGACTGAACGCCTCTAAGTCAGAATCC 1174604 >seq9497 Length=599310 Score = 75.2 bits (82), Expect = 2e-11 Identities = 46/49 (94%), Gaps = 0/49 (0%) Strand=Plus/Minus Query 66 GAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 |||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 22374 GAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 22326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 817680256000