Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gekko_20japonicus_20[refseq_20GCF_5F001447785.1_202015-11-25] 191,500 sequences; 2,490,274,461 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq15340 125 6e-24 seq10834 111 1e-19 seq5570 87.8 1e-12 >seq15340 Length=28550 Score = 125 bits (138), Expect = 6e-24 Identities = 105/129 (81%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || ||||| || |||||||||||||||||||| || || || || |||||||| | Sbjct 12873 CATGAAAAGATCCGGGATCCAGAGGGCGTAGAAGAGGTCCCGGGCACGCTGCTCCTCCTT 12932 Query 66400 GCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTA 66459 ||| ||||| || |||||||||||||||||||||| |||||| || |||||||| Sbjct 12933 CCCGGTGTTTTTCTTCAGGTCGAGGAACTCAAAGATGTCGAAATGCCAGGGCTCCAGGTA 12992 Query 66460 GATGGCGAA 66468 |||||| || Sbjct 12993 GATGGCAAA 13001 Score = 111 bits (122), Expect = 1e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||| ||||| || || ||||||||||| || ||||| ||||| |||| ||||| || Sbjct 8281 GGTGTACTCCACGATCTCGGTGCACAGGTTGCTGCATTTGATGGTCCCCAGGTTCTGCTG 8340 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || ||||| || ||||| | |||||||| | ||||||||| || || ||||| || Sbjct 8341 GTTGCTCTTCCGGTTGCAGGAGTCCTTGTAGAGCATGTACGGGGTCCCCGTCTCCGTCTG 8400 Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192 |||||| |||||||||| ||| || Sbjct 8401 GGACTCGATGATGGCGTACCACAG 8424 >seq10834 Length=8617 Score = 111 bits (122), Expect = 1e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||| ||||| || || ||||||||||| || ||||| ||||| |||| ||||| || Sbjct 5622 GGTGTACTCCACGATCTCGGTGCACAGGTTGCTGCATTTGATGGTCCCCAGGTTCTGCTG 5681 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || ||||| || ||||| | |||||||| | ||||||||| || || ||||| || Sbjct 5682 GTTGCTCTTCCGGTTGCAGGAGTCCTTGTAGAGCATGTACGGGGTCCCCGTCTCCGTCTG 5741 Query 66169 GGACTCAATGATGGCGTGCCAAAG 66192 |||||| |||||||||| ||| || Sbjct 5742 GGACTCGATGATGGCGTACCACAG 5765 >seq5570 Length=534135 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 61027 GAACCCCTATTGCAAGAGAATCCTCGTCGTTTCGTATTGTTCCCCATCGAGTATGAGGAT 61086 |||||||| | ||||| ||||| ||||| || || | || ||||| |||| | ||| Sbjct 267884 GAACCCCTGCTTCAAGAAAATCCCCGTCGCTTTGTCATCTTTCCCATTCAGTACCATGAT 267943 Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGT 61139 || |||| |||||||| || || || |||||||||||||||| || ||||| Sbjct 267944 ATCTGGCAGATGTACAAGAAAGCAGAGGCTTCCTTCTGGACGGCTGAAGAGGT 267996 Score = 87.8 bits (96), Expect = 1e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 ||||||| ||| ||||| || || || | ||||| || |||||||| || ||||||| Sbjct 271255 TGGAACGATTCAGCCAGGAAGTACAGGTCACAGAGGCTCGCTGTTTCTATGGGTTCCAGA 271314 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 |||| ||||| || |||| || || ||||| ||| | || || || || ||||||| || Sbjct 271315 TTGCTATGGAAAACATCCATTCAGAAATGTATAGTTTGCTTATTGACACTTACATCAAGG 271374 Query 61376 A 61376 | Sbjct 271375 A 271375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396640113560000