Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Gekko_20japonicus_20[refseq_20GCF_5F001447785.1_202015-11-25] 191,500 sequences; 2,490,274,461 total letters Query= NC_027867.1 Length=651523 Score E Sequences producing significant alignments: (Bits) Value seq13445 98.7 4e-15 seq5061 86.0 3e-11 >seq13445 Length=630170 Score = 98.7 bits (108), Expect = 4e-15 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 349084 CTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCCGGCAAAGTGGAA 349143 ||||||||| | ||||| || || |||||||||||||||| ||| ||||| | ||||| Sbjct 626140 CTCCTTGAGACGGGGCACACCGAGCGTCACGTTCTTGGCCGAGACACCGGCGTAATGGAA 626199 Query 349144 GGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGGCCCGCGAGGATGCCTAC 349203 ||| | ||||||| ||| ||| |||||| || | | ||||| | || || || || Sbjct 626200 GGTGTTCAGGGTCATCTGAGTGGCGGGCTCTCCCAGGGACTGGGCAGCCAGCGCCCCCAC 626259 Query 349204 CATCTCGCCGGG 349215 ||||||||| || Sbjct 626260 CATCTCGCCTGG 626271 >seq5061 Length=133251 Score = 86.0 bits (94), Expect = 3e-11 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 349072 GGCGTCGAGAATCTCCTTGAGTCTGGGCATGCCCAGGGTCACGTTCTTGGCCGCGACGCC 349131 ||||| || ||||| |||| || |||| ||||| || | |||| ||| |||||||| Sbjct 122928 GGCGTTGATGATCTCTTTGATCCTCGGCACCCCCAGCGTGATGTTCATGGAGGCGACGCC 122987 Query 349132 GGCAAAGTGGAAGGTCTGGAGGGTCAACTGCGTGAGGGGCTCGCCGATGCACTGG 349186 ||||| |||||||||| || |||| || ||| ||||||||||||| |||| Sbjct 122988 AGCAAAATGGAAGGTCTTCAGTGTCATTTGTGTGCCAGGCTCGCCGATGCTCTGG 123042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079499338317000