Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Malaclemys_20terrapin_20terrapin_20[genbank_20GCA_5F001728815.2_2020 16-09-20] 21,684 sequences; 2,439,754,582 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq16337 98.7 8e-16 seq12452 98.7 8e-16 seq14676 86.0 5e-12 >seq16337 Length=344012 Score = 98.7 bits (108), Expect = 8e-16 Identities = 108/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 66329 TCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGT 66388 ||||| || ||| || ||||| || ||||||||||| ||||||| || | ||||| Sbjct 241641 TCTACCCGTTTCATGAAGAGATCGGGAATCCAGAGGGCAAAGAAGAGGTCCCTGGCTCGC 241700 Query 66389 TGCTCCTCAATGCC-GTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCA 66447 |||||||| |||| ||| || || || ||| || |||||||| ||||| |||||| Sbjct 241701 TGCTCCTCCTTGCCAGTG-TTCTTCTTCAGGTCAAGAAACTCAAAAATGTCCAAATGCCA 241759 Query 66448 TGGTTCCAGGTAGATGGCGAA 66468 ||| || ||||||||||| || Sbjct 241760 TGGCTCAAGGTAGATGGCAAA 241780 >seq12452 Length=479537 Score = 98.7 bits (108), Expect = 8e-16 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| ||||| |||||| | | ||||| ||||||||||| || || |||| Sbjct 154853 TGGAGCGATTCAGCCAGGAAGTGCAAATCCCAGAGGCTCGTTGTTTCTATGGATTTCAGA 154794 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCA 61372 || || |||||||| |||||||||||||||||| | || || || || ||||||| Sbjct 154793 TTCTAATTGAGAATGTTCACTCGGAGATGTACAGTTTGCTAATAGACACTTACATCA 154737 >seq14676 Length=200364 Score = 86.0 bits (94), Expect = 5e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| || || || || || |||| || || |||||||| |||||||||| Sbjct 111692 TGGAGCGATTCAGCCAAGAAGTACAGGTAACGGAAGCACGCTGTTTCTATGGCTTCCAGA 111751 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACAT 61370 |||| ||||| || | || || || ||||||||| | ||||| ||||| ||||| Sbjct 111752 TTGCTATGGAAAACATACATTCAGAAATGTACAGTCTGCTCATAGATACTTACAT 111806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397462933213760