Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21] 883,920 sequences; 1,404,220,341 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq105320 159 5e-37 seq203971 150 3e-34 seq257496 145 1e-32 >seq105320 Length=10454 Score = 159 bits (176), Expect = 5e-37 Identities = 175/224 (78%), Gaps = 14/224 (6%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTC-GCGCTTACTAGGAATTT 59 ||||||||||||| ||| || ||||| ||| ||| ||||| | || |||||| |||||| Sbjct 9854 GTACAAAGGGCAGAGACTTAATCAACACGAACTT-ATGACCCCGCACTTACTGGGAATT- 9911 Query 60 CCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT----TTCAA- 114 ||||||| | | || ||||||||| | ||||||||||| |||| ||||| Sbjct 9912 CCTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCAC----AAATGGGGTTCAAC 9967 Query 115 AGATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACA-TCAGTGTAGCGCG 173 || ||||| | |||||||||| ||| | | || || ||| | || ||||||||||| | Sbjct 9968 AGGTTACCTGTACCTGTCGGCATAGGGTAGACACACGCTGA-TCCAGTCAGTGTAGCGTG 10026 Query 174 CGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 ||||| |||| | |||| |||||||||||||||||||||||||| Sbjct 10027 CGTGCAGCCCCGGACATTTAAGGGCATCACAGACCTGTTATTGC 10070 >seq203971 Length=3048 Score = 150 bits (166), Expect = 3e-34 Identities = 177/234 (76%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||| |||||| || |||| ||||| || ||||| ||| |||||| |||||| | Sbjct 1499 GTACAAAGGGTAGGGACTTAATCAATGCGAGTTT-ATGACCCGCACTTACTGGGAATT-C 1556 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 || ||| | | || ||||||||| | |||||||||| || ||||| | || Sbjct 1557 CTTGTTCATGGGGAATAATTGCAATCTCCGATCCCCATCATGAATGGGGTTCAACGGGTT 1616 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||||||||| ||| | | || || ||| | ||||||| ||| |||| Sbjct 1617 ACCCGCACCTGTCGGCATAGGGTAGACACACGCTGAGCCAGTTAGTGTAGTGCGTGTGCA 1676 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | ||||||||||| |||||||||||||||||| ||||| || ||||| Sbjct 1677 GCCCCGGACATCTAAGGGTATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 1729 >seq257496 Length=4494 Score = 145 bits (160), Expect = 1e-32 Identities = 171/226 (76%), Gaps = 4/226 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||| || |||| | |||||| ||||| || |||||| |||||| | Sbjct 2490 GTACAAAGGGCAGGGAATTAATCAAAGTGAGCTT-ATGACCTGCACTTACTGGGAATT-C 2547 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATT- 119 |||||| | || || |||||||| | |||||||||| || ||||| | | Sbjct 2548 CTCGTTCATGAGAAATTATTGCAATCCCCAATCCCCATCATGAATGTGGTTCAATGGGTC 2607 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||||| || ||| | | || || ||| | |||||||| | ||||| Sbjct 2608 ACCCGTACCTGTTGGTGTAGGGTAGACACACGCTGAGCCAGTTAGTGTAGCACACGTGCA 2667 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 |||| |||||||||||||||||||||||||||||||| ||||| || Sbjct 2668 GCCCTGAACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT 2712 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 745560642800