Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21] 883,920 sequences; 1,404,220,341 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq203971 168 1e-39 >seq203971 Length=3048 Score = 168 bits (186), Expect = 1e-39 Identities = 214/285 (75%), Gaps = 12/285 (4%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACT-TTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| |||| |||| || ||| ||| | | | |||||||||||||||||| ||||| Sbjct 2399 ATGCTCTTAACTGAGTGTCCCAGGG-GCCCGAAGTGTTTACTTTGAAAAAATTAAAGTGT 2341 Query 98 TCAAAGCAGGCC-TTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTT 156 |||||| ||||| |||| |||||| ||| |||||||| ||||||||| | ||||| Sbjct 2340 TCAAAG-AGGCCGGTTGCCGGAATACTCCAGCTAGGAATAATGGAATAGGAC-TCCGGTT 2283 Query 157 CTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGT 216 ||||||||||||||| | |||| | |||||||| ||||| | |||||| | || Sbjct 2282 CTATTTTGTTGGTTTTCGGAACCGGGGCCATGATTAAGAGGGACGGCCGGGGGCATTCGT 2223 Query 217 ATTCAATTGTC---AGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGC 273 ||| || | |||||||||||||||||| | |||| | | |||||||| Sbjct 2222 ATT---GTGCCTCTAGAGGTGAAATTCTTGGACTGGCGCAAGATGGCCCAGAGCGAAAGC 2166 Query 274 GTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 || ||||| |||||||||||||||| |||| ||| | || || Sbjct 2165 ATTTGCCAAGAATGTTTTCATTAATCA-AGAACAAAAATCAGAGG 2122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 907110364160