Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21] 883,920 sequences; 1,404,220,341 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq657085 145 3e-32 seq801391 122 4e-25 seq730157 91.5 6e-16 seq330303 89.7 2e-15 seq59606 89.7 2e-15 seq33025 84.2 9e-14 seq61612 77.0 1e-11 >seq657085 Length=275 Score = 145 bits (160), Expect = 3e-32 Identities = 101/115 (88%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 159 GGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGA 100 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || || |||||| ||| ||||||||||| ||||| | ||||||||||||||| Sbjct 99 GGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGGGGCGA 45 >seq801391 Length=505 Score = 122 bits (134), Expect = 4e-25 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 3 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 62 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||| ||||||| || | ||||| ||||||| |||||| | Sbjct 63 ACCGGCACGAGACCGATAGTCGACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAG 122 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || ||||||| ||| | ||| || || Sbjct 123 AGAGAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAAACG 162 >seq730157 Length=347 Score = 91.5 bits (100), Expect = 6e-16 Identities = 81/100 (81%), Gaps = 1/100 (1%) Strand=Plus/Plus Query 584 TGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTC 643 |||||||| |||| |||| ||||||||||||||||||||||||| | || ||| | Sbjct 208 TGAACTAT-CCTGGGCAGGGCAAAGCCAGAGGAAACTCTGGTGGAGGTCTGTAGAGGTCC 266 Query 644 TGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || |||||||||| |||| | |||||||||||||||| Sbjct 267 TGATGTGCAAATCGTCCGTCTGACTTGGGTATAGGGGCGA 306 >seq330303 Length=5341 Score = 89.7 bits (98), Expect = 2e-15 Identities = 97/126 (77%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | |||||| || ||||||| |||||||||||||||||| || |||| | || Sbjct 4369 GAGCATGAGCATGTGTGGAGGGACCCTAAAGATGGTGAACTATGCGTGGGCAGGGCGGAG 4428 Query 609 CCAGAGGAAACTCT-GGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAAT 667 | |||||||||||| |||||||| || ||| | ||| | |||||||| || ||| || Sbjct 4429 CTAGAGGAAACTCTGGGTGGAGG-TCTGAGCAGGCCTGACATGCAAATCAATTATCAGAT 4487 Query 668 TTGGGT 673 ||||| Sbjct 4488 GTGGGT 4493 >seq59606 Length=2109 Score = 89.7 bits (98), Expect = 2e-15 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 590 ATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGT 649 ||||||| |||| |||||||||||||||||||||| || || ||| || ||| ||| Sbjct 1067 ATGCCTGGGCAGGGCAAAGCCAGAGGAAACTCTGGTGGCGGTCCGTAGCAGTCCTGACGT 1008 Query 650 GCAAATCGATCGTCAAATTTGGGTATAGGGGC 681 |||||||||| ||| | ||||||||||||| Sbjct 1007 GCAAATCGATTGTCCGACCTGGGTATAGGGGC 976 >seq33025 Length=16954 Score = 84.2 bits (92), Expect = 9e-14 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 573 CCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCT 632 || ||||||||||| ||||| ||| | || |||||||| |||||||||||||||| Sbjct 9364 CCTAAAGATGGTGAGCTATGTCTGGGCAAGGCAAAGCCAGACGAAACTCTGGTGGAGGTC 9305 Query 633 CGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | || ||| || ||||||||| | || || | |||||||||||| || Sbjct 9304 CATAGTGGTCCTCACGTGCAAATTGGTCATCCGACCTGGGTATAGGGGTGA 9254 >seq61612 Length=8513 Score = 77.0 bits (84), Expect = 1e-11 Identities = 77/100 (77%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 580 ATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCG 639 ||| |||| |||||| | |||| |||||||||||||| ||||||| || | |||| Sbjct 6501 ATGATGAAGTATGCCCGGGCAGGGCAAAGCCAGAGGAAACGCTGGTGGGGGACTGTAGCG 6560 Query 640 GTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGG 679 || ||| | || ||||| ||||| || ||||||||||| Sbjct 6561 GTGCTGACATGGAAATCAGTCGTCCGATCTGGGTATAGGG 6600 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2061039916000