Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21] 883,920 sequences; 1,404,220,341 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq105320 205 1e-50 seq203971 199 6e-49 seq257496 178 2e-42 seq13649 167 4e-39 seq81125 149 1e-33 seq303554 141 1e-31 seq98035 84.2 3e-14 seq134830 80.6 4e-13 seq42289 80.6 4e-13 >seq105320 Length=10454 Score = 205 bits (226), Expect = 1e-50 Identities = 192/241 (80%), Gaps = 14/241 (6%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 |||||||||||| |||||| |||| | |||| |||||||||||||||||||||||||| | Sbjct 10013 GTCAGTGTAGCGTGCGTGCAGCCCCGGACATTTAAGGGCATCACAGACCTGTTATTGC-T 10071 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTC 134 | | || | |||||| | |||| | |||||||||||||| | | || | | || Sbjct 10072 CGATCT-CAGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGACGCCGATCGC--TC 10128 Query 135 GATGGGG--------CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGA 186 | |||| ||| |||||| | | |||||||||||||||||||||||||||| Sbjct 10129 G--GGGGTCGCATAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGA 10186 Query 187 CAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGC 246 ||||| ||||||||| |||||||||||||| ||||||||||| |||||| ||||||||| Sbjct 10187 TAAATCGCTCCACCAATTAAGAACGGCCATGTACCACCACCCACAGAATCGAGAAAGAGC 10246 Query 247 T 247 | Sbjct 10247 T 10247 >seq203971 Length=3048 Score = 199 bits (220), Expect = 6e-49 Identities = 189/244 (77%), Gaps = 23/244 (9%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 || ||||||| ||| |||| |||| | ||||||||||| ||||||||||||||||||| | Sbjct 1657 GTTAGTGTAGTGCGTGTGCAGCCCCGGACATCTAAGGGTATCACAGACCTGTTATTGC-T 1715 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTC 134 ||| || | |||||| | | || | |||||||||||||| Sbjct 1716 CAATCT-CGGGTGGCTGAATGTCATTTGTCCCTCTAAGAAG------------------- 1755 Query 135 GATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCAC 194 | || ||| |||||| | | |||| ||||||||| |||||||| |||||||||||| Sbjct 1756 --TTGGACTAGTTAGCATGCCAGAGTCTTGTTCGTTATTGGAATTAATCAGACAAATCAC 1813 Query 195 TCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATC 254 ||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||| ||| Sbjct 1814 TCCACCAACTAAGAATGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTATCGATC 1873 Query 255 TGTC 258 | || Sbjct 1874 TATC 1877 >seq257496 Length=4494 Score = 178 bits (196), Expect = 2e-42 Identities = 196/259 (76%), Gaps = 23/259 (9%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 || |||||||| | ||||| |||| ||||||||||||||||||||||||||||||||| | Sbjct 2648 GTTAGTGTAGCACACGTGCAGCCCTGAACATCTAAGGGCATCACAGACCTGTTATTGC-T 2706 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTC 134 ||| || || | ||| | ||| | |||||||||||||| | || | || Sbjct 2707 CAATCTCAGATAG-CTGAACACCACTTGTCCCTCTAAGAAGTTGGATGCCGA------TC 2759 Query 135 GAT--GGGG--------CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCA 184 | | |||| ||| |||||| | | |||| |||||||||||||||||||| Sbjct 2760 GCTCAGGGGTCACATAACTAGTTAGCATGCCAGAATCTCATTCGTTATCGGAATTAACCA 2819 Query 185 GACAAATCACTCCACCAACTAAGAACGGCCATGCA-----CCACCACCCATAGAATCAAG 239 |||||||| ||||||||||||||| |||||||||| ||| |||| |||||| || Sbjct 2820 GACAAATCGCTCCACCAACTAAGAGCGGCCATGCATACACACACACCCCACAGAATCGAG 2879 Query 240 AAAGAGCTATCAATCTGTC 258 |||||||||| ||||||| Sbjct 2880 AAAGAGCTATTGATCTGTC 2898 >seq13649 Length=3161 Score = 167 bits (184), Expect = 4e-39 Identities = 107/117 (91%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | |||||||||||||||||||||||||||||||||| |||||||| Sbjct 1830 CTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 1889 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||| Sbjct 1890 ACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTATCGATCTGTC 1946 >seq81125 Length=14468 Score = 149 bits (164), Expect = 1e-33 Identities = 87/90 (97%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 169 TTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCC 228 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 10604 TTATCGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCC 10545 Query 229 ATAGAATCAAGAAAGAGCTATCAATCTGTC 258 | |||||| ||||||||||||||||||||| Sbjct 10544 ACAGAATCGAGAAAGAGCTATCAATCTGTC 10515 >seq303554 Length=1465 Score = 141 bits (156), Expect = 1e-31 Identities = 105/123 (85%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | ||||| ||| |||||||||||||||||||||||| |||||||| Sbjct 169 CTAGTTAGCATGCCAGAGTCTCATTCCTTATCGGAATTAACCAGACAAATCGCTCCACCA 228 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTCCTC 261 | |||||| |||||||||||||| || |||||| ||||||||||||||||||||| | Sbjct 229 ATGAAGAACAACCATGCACCACCACACACAGAATCGAGAAAGAGCTATCAATCTGTCAAC 288 Query 262 CCT 264 ||| Sbjct 289 CCT 291 >seq98035 Length=18801 Score = 84.2 bits (92), Expect = 3e-14 Identities = 89/116 (77%), Gaps = 6/116 (5%) Strand=Plus/Plus Query 143 TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAA 202 || |||||| || | | || || ||||| ||||| |||| |||||| | |||| Sbjct 4 TAATTAGCATGTCAGAGCCTTATTGGTTATTGGAATCCACCA-----ATCACTTCCCCAA 58 Query 203 CTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||| ||||||| || | | || ||||||||||||||||||| |||||||| Sbjct 59 CTAAGAACAACCATGCAACATC-CACAAAGAATCAAGAAAGAGCTATTAATCTGTC 113 >seq134830 Length=23170 Score = 80.6 bits (88), Expect = 4e-13 Identities = 79/98 (81%), Gaps = 3/98 (3%) Strand=Plus/Plus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCT-AAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||| || | ||| | || | |||||| |||||||||||||||||||||||| ||| Sbjct 11453 CAGTGTAATGCACATGCAGACCCGGACATCTTAAGGGCATCACAGACCTGTTATTG-CTC 11511 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGA 113 |||| || |||||| | |||| | || ||||||||| Sbjct 11512 AAAC-TCGGGTGGCTGAATGCCACTTGTTCCTCTAAGA 11548 >seq42289 Length=3262 Score = 80.6 bits (88), Expect = 4e-13 Identities = 77/99 (78%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 160 TCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCA 219 ||| ||| ||||| ||||||||||||||| | || ||||||||||||| |||||| Sbjct 1036 TCTAGTTTATTATCAGAATTAACCAGACAAGTTGCTTTACCAACTAAGAACAACCATGCC 1095 Query 220 CCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 || ||||||| | ||| |||| |||||| |||| || Sbjct 1096 CCGCCACCCACAAAATTGGGAAACTGCTATCGATCTATC 1134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 789977021520