Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21] 883,920 sequences; 1,404,220,341 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq413679 251 1e-64 seq450064 199 7e-49 seq470198 87.8 3e-15 seq343091 77.0 5e-12 >seq413679 Length=1257 Score = 251 bits (278), Expect = 1e-64 Identities = 215/264 (81%), Gaps = 5/264 (2%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||| ||||||||| ||||| |||||||||||| ||||||| ||||||| Sbjct 1226 TCATCAGTAGGGTAGAACTAACCTATCTCACGACGGTCTAAACTCAGCTCATCTTCCCTA 1167 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||||| |||||||||| |||| ||||| |||||| ||||||||||||||||| Sbjct 1166 TTAGTG----AACAATCCAATGCTTGGTGAATTATGCTTCACAATGATAGGAAGAGCCGA 1111 Query 151 CATCGAAGGATCAAAAAGCA-ACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 |||||||| || |||||||| ||||| || |||||||||||| ||||||| ||||||||| Sbjct 1110 CATCGAAGAATAAAAAAGCACACGTCACTGTGAACGCTTGGCCGCCACAAACCAGTTATC 1051 Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAG 269 |||||||||||||||||| |||||| | | ||| | | | |||||| | || Sbjct 1050 CCTGTGGTAACTTTTCTGACACCTCCTGGTTAAAACCCAAAAAGTCAGAAGGATTGTGAG 991 Query 270 GCCACACTTTCATGGTTTGTATTC 293 ||| | |||| | ||| ||||||| Sbjct 990 GCCCCGCTTTTACGGTCTGTATTC 967 >seq450064 Length=7696 Score = 199 bits (220), Expect = 7e-49 Identities = 142/163 (87%), Gaps = 5/163 (3%) Strand=Plus/Plus Query 42 GTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGA 101 ||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||| Sbjct 717 GTAAAACTAACTTGTCTCACGACAGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGA 776 Query 102 ACAATCCAACGCTTACCGAATT-----CTGCTTCGGTATGATAGGAAGAGCCGACATCGA 156 |||||||||||||| ||||| ||||| ||||||||||||||| ||||||| Sbjct 777 ACAATCCAACGCTTGGTGAATTGGTGAACGCTTCACAATGATAGGAAGAGCCAACATCGA 836 Query 157 AGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAA 199 |||||||||||| ||||||||||||||||||||| |||||| Sbjct 837 AGGATCAAAAAGTGACGTCGCTATGAACGCTTGGCCACCACAA 879 >seq470198 Length=7902 Score = 87.8 bits (96), Expect = 3e-15 Identities = 88/112 (79%), Gaps = 3/112 (3%) Strand=Plus/Minus Query 182 AACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTC 241 || |||||||||||||||||||||||||||| |||||||||||||| || ||| || | Sbjct 6648 AAAGCTTGGCTGCCACAAGCCAGTTATCCCTATGGTAACTTTTCTGACATCTCCTGCTTA 6589 Query 242 AAATTTCGAGGGA-CTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATT 292 ||| | | | | |||||| | ||| | |||||||||| |||||||| Sbjct 6588 AAA--CCAAAAAATCAGAAGGATTGCAAGGACCCACTTTCATGCTTTGTATT 6539 >seq343091 Length=3980 Score = 77.0 bits (84), Expect = 5e-12 Identities = 54/62 (87%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 ||||||||||||||||| ||| |||| | |||||||||||| |||| ||||||||||| Sbjct 358 ATTAGTGGGTGAACAATGCAAGGCTTGCTGAATTCTGCTTCACAATGAGAGGAAGAGCCG 299 Query 150 AC 151 || Sbjct 298 AC 297 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 846847787520