Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21] 883,920 sequences; 1,404,220,341 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq105320 159 7e-37 seq257496 149 1e-33 seq203971 149 1e-33 >seq105320 Length=10454 Score = 159 bits (176), Expect = 7e-37 Identities = 194/259 (75%), Gaps = 4/259 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || | | ||| |||||||||||||||| Sbjct 10111 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCTGA-GATCGAG-CAATAACAGGTCTGTG 10054 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 ||||||||| |||| | |||| |||||| |||||||||||| | || || || | Sbjct 10053 ATGCCCTTAAATGTCCGGGGCTGCACGCACGCTACACTGACTGGATCAGCGTGTGTCTAC 9994 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| |||| |||| ||||| || | || | | | ||| ||||||| | | |||| Sbjct 9993 CCTATGCCGACAGGTACAGGTAACCTGTTGAACCCCATTTGTGATGGGGATCGGGGATTG 9934 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGC-GTGTCATCAGCACGCGTTGAT 309 |||||||| | | | |||||||||| || |||||| || | ||||| || || |||||| Sbjct 9933 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGGTCATAAGTTCGTGTTGAT 9874 Query 310 TACGTCCCTGCCCTTTGTA 328 || ||| |||||||||||| Sbjct 9873 TAAGTCTCTGCCCTTTGTA 9855 >seq257496 Length=4494 Score = 149 bits (164), Expect = 1e-33 Identities = 190/258 (74%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | || | ||| || || ||||| |||||||||||||||| Sbjct 2746 CTTCTTAGAGGGACAAGTGGTGTTCAGCT-ATCTGAGATTGAG-CAATAACAGGTCTGTG 2689 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||||| |||| ||||| | |||||||| || | || || || | Sbjct 2688 ATGCCCTTAGATGTTCAGGGCTGCACGTGTGCTACACTAACTGGCTCAGCGTGTGTCTAC 2629 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| || |||| |||| | | | || | | || || ||||||| | | |||| Sbjct 2628 CCTACACCAACAGGTACGGGTGACCCATTGAACCACATTCATGATGGGGATTGGGGATTG 2569 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||| ||| ||| | |||||||||| || |||||| || ||||| ||| | | |||||| Sbjct 2568 CAATAATTTCTCATGAACGAGGAATTCCCAGTAAGTGCAGGTCATAAGCTCACTTTGATT 2509 Query 311 ACGTCCCTGCCCTTTGTA 328 | ||||||||||||||| Sbjct 2508 AATTCCCTGCCCTTTGTA 2491 >seq203971 Length=3048 Score = 149 bits (164), Expect = 1e-33 Identities = 190/258 (74%), Gaps = 3/258 (1%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | | | | |||| || | ||||| |||||||||||||||| Sbjct 1755 CTTCTTAGAGGGACAAATGACATTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 1698 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 || ||||||||||| | |||| |||| ||| ||||||| || | || || || | Sbjct 1697 ATACCCTTAGATGTCCGGGGCTGCACACGCACTACACTAACTGGCTCAGCGTGTGTCTAC 1638 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| |||| |||| |||||| | | || | | || || ||||||| | |||| Sbjct 1637 CCTATGCCGACAGGTGCGGGTAACCCGTTGAACCCCATTCATGATGGGGATCGGAGATTG 1578 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | ||| |||||| || |||||| ||| ||||| | | ||| |||||| Sbjct 1577 CAATTATTCCCCATGAACAAGGAATTCCCAGTAAGTGCGGGTCATAAACTCGCATTGATT 1518 Query 311 ACGTCCCTGCCCTTTGTA 328 | |||||| ||||||||| Sbjct 1517 AAGTCCCTACCCTTTGTA 1500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 938827509760