Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21] 883,920 sequences; 1,404,220,341 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq341558 315 2e-83 seq413679 210 7e-52 seq318367 125 2e-26 seq472474 82.4 2e-13 seq370208 78.8 3e-12 seq44634 77.0 1e-11 >seq341558 Length=4222 Score = 315 bits (348), Expect = 2e-83 Identities = 219/248 (88%), Gaps = 3/248 (1%) Strand=Plus/Plus Query 188 TAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAA---ACGGCTCCCACT 244 ||||| |||||| ||| || ||||||||||||||| ||| | | | | |||||||| Sbjct 1795 TAAGTGAAAAAATGATCAGAGTAGTGGTATTTCACCGGCGGCCCAGGCAGGCCTCCCACT 1854 Query 245 TATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCT 304 |||||||| ||||||| ||| |||||| | | || ||||||||||||||||||||||| Sbjct 1855 TATTCTACGCCTCTCATGTCTCTTCACAGGGCCAGAGTAGAGTCAAGCTCAACAGGGTCT 1914 Query 305 TCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGA 364 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1915 TCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGACTGTGGTTTCGCTAGATAGTAGG 1974 Query 365 TAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCA 424 |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| Sbjct 1975 TAGGGACAGTGGGAATCTCGTTCATCCATTCATGCATGTCACTAATTAGATGACGAGGCG 2034 Query 425 TTTGGCTA 432 |||||||| Sbjct 2035 TTTGGCTA 2042 >seq413679 Length=1257 Score = 210 bits (232), Expect = 7e-52 Identities = 283/393 (72%), Gaps = 32/393 (8%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| || |||| ||||||| |||| |||| | | || ||||||||| |||| | Sbjct 934 CTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAGCTCGCTTTGGGACACCTGTGTTACG 875 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC-----ATCAACCC 121 |||| |||| ||| ||||||||| ||||||||||||||| |||| | || Sbjct 874 GTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGGTGCTGTCCCTGGAGCAGATT 815 Query 122 GGATC-GGCCCGCGAAGGAC-CTTAACGCCAGAA-------------------AATGGTC 160 | | | ||| || | || | ||| ||||||| || | | Sbjct 814 GCACCTGGCACGTGCCGGGCACTTGTAGCCAGAAGNNNNNNNNNNNNNNAAGCAAGAGCC 755 Query 161 GGTGAAGACCAGTTCCGCT---TCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTAT 217 | | | | | | || ||| | ||||| |||||| ||| || ||||||| || Sbjct 754 CCTCAGGGCTCGCCTCCCTCCCTCACCGGGTAAGTGAAAAAATGATCAGAGTAGTGGGAT 695 Query 218 TTCACTTGC-GCC--GAAACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAA 274 ||||| || ||| | | | |||||||||||||||||||||||| ||| |||||| Sbjct 694 TTCACCGGCAGCCTGGGCAGGCCTCCCACTTATTCTACACCTCTCATGTCTCTTCACAGG 635 Query 275 GTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTT 334 | | ||||| || |||||||||||||||||||||||||||||||||| ||||||| ||| Sbjct 634 GCCAGACTACAGCCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCTGCCAAGCTTGTT 575 Query 335 CCCTTGGCTGTGGTTTCGCTAGATAGTAGATAG 367 ||||||||||||||||||||||||||||| ||| Sbjct 574 CCCTTGGCTGTGGTTTCGCTAGATAGTAGGTAG 542 >seq318367 Length=3985 Score = 125 bits (138), Expect = 2e-26 Identities = 75/79 (95%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 434 CTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTT 493 ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||| Sbjct 3511 CTTAAGAGAGTCATAGTTACTCCCGCCATTTACCCGCGCTTCATTGAATTTCTTCACTTT 3570 Query 494 GACATTCAGAGCACTGGGC 512 |||||||||||||| |||| Sbjct 3571 GACATTCAGAGCACCGGGC 3589 >seq472474 Length=3563 Score = 82.4 bits (90), Expect = 2e-13 Identities = 45/45 (100%), Gaps = 0/45 (0%) Strand=Plus/Minus Query 388 ATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 432 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3563 ATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA 3519 Score = 75.2 bits (82), Expect = 4e-11 Identities = 41/41 (100%), Gaps = 0/41 (0%) Strand=Plus/Minus Query 434 CTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 ||||||||||||||||||||||||||||||||||||||||| Sbjct 45 CTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 5 >seq370208 Length=12614 Score = 78.8 bits (86), Expect = 3e-12 Identities = 58/68 (85%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| |||| || |||||||||||| |||| | |||||||||||||| |||||| Sbjct 9144 CTTCTGCTCCACAGAAGGTTTCTGTTCTCCCTGAGCTCGCCTTAGGACACCTGTGTTATG 9203 Query 67 GTTTAACA 74 |||| ||| Sbjct 9204 GTTTGACA 9211 >seq44634 Length=4596 Score = 77.0 bits (84), Expect = 1e-11 Identities = 66/82 (80%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 25 TTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAACAGATGTGCCGC 84 |||||| ||| |||| | ||||||||||| ||||||| |||| |||| ||| || | Sbjct 1694 TTTCTGCCCTCTCTGAGCTCACCTTAGGACACTTGCGTTACAGTTTGACAGGTGTACCAC 1635 Query 85 CCCAGCCAAACTCCCCACCTGA 106 ||||| |||||||| ||||||| Sbjct 1634 CCCAGTCAAACTCCTCACCTGA 1613 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1620746140160