Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21] 883,920 sequences; 1,404,220,341 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq203971 286 1e-74 seq238600 203 1e-49 seq304555 127 6e-27 >seq203971 Length=3048 Score = 286 bits (316), Expect = 1e-74 Identities = 344/455 (76%), Gaps = 26/455 (6%) Strand=Plus/Plus Query 3 ACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTC 61 ||||||||||||| || | || |||||||| ||||||| | ||||| | |||||||||| Sbjct 2598 ACTCATTCCAATTCCAGGGCCTCAAAAGAGTCCTGTATTATTATTTTTCATCACTACCTC 2657 Query 62 CCCGTGTCGGGATTGGGTAATT--TGC--GC-GCCTGCTGCCTTCCTTGGATGTGGTAGC 116 | | ||| ||| ||||||||| ||| || |||||||||||||||||||||||||||| Sbjct 2658 CATGCGTCAGGAGTGGGTAATTGCTGCCTGCTGCCTGCTGCCTTCCTTGGATGTGGTAGC 2717 Query 117 CGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCT-AATTCCCCGTTACCCGTTGATACCA 175 ||||||||||| |||||||| ||||||||||||| | |||||| ||||| || | |||| Sbjct 2718 CGTTTCTCAGGTTCCCTCTCTGGAATCGAACCCTGATTTCCCCATTACCAGTGGTCACCA 2777 Query 176 TGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGC 235 | |||||| | ||||||||||||||||||||||||| || ||||| | | |||| Sbjct 2778 TTGTAGGCGCAGAAAGTACCATCGAAAGTTGATAGGGCAGACGTTCGAATGCATCGTCGC 2837 Query 236 CGGCTCAAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACC-AAGGAGCCCCGAAGG 292 || | | || |||||| | | ||||| || ||||| ||| ||| | | Sbjct 2838 CGCCACGGGGGTGTGCGATCGGCCCGAGGTTATCTAGAGTCACCAAAGTGGCCGAGGCGA 2897 Query 293 GC----GTTGGTTTTTTATCTAATAAAT--ACACCCCTTCCGAAGTC-GGGGTTTTTAGC 345 || ||||| |||| ||| || ||| ||| | || || ||| | | | | || Sbjct 2898 GCCCAGGTTGG-TTTTGGTCTGATGAATGCACATATCCTCAGAGGTCAGCGCTCGTCGGC 2956 Query 346 ATGTATTAGCTCTAGAATTACCACGGTTATCCATGTA-----GTAAGGTACTATCAAATA 400 |||||||||||||||||||||||| |||||| ||| | ||| || |||| Sbjct 2957 ATGTATTAGCTCTAGAATTACCACAATTATCCGAGTAACGGTGGGAGGGAC---CAAAGG 3013 Query 401 AACGATAACTGATTTAATGAGCCATTCGCAGTTTC 435 ||| ||||||||||||||||||||||||||||||| Sbjct 3014 AACCATAACTGATTTAATGAGCCATTCGCAGTTTC 3048 >seq238600 Length=8960 Score = 203 bits (224), Expect = 1e-49 Identities = 135/150 (90%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 75 TGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTC 134 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 497 TGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTC 438 Query 135 TCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTAC 194 |||||||||||||||| ||||||||||||| || | |||||||||||| | ||| Sbjct 437 TCCGGAATCGAACCCTGATTCCCCGTTACCTGTGGTCACCATGGTAGGCACAGAAAGTAC 378 Query 195 CATCGAAAGTTGATAGGGCAGAAATTTGAA 224 |||||||||||||||||||||| || ||| Sbjct 377 CATCGAAAGTTGATAGGGCAGATGTTCGAA 348 Score = 82.4 bits (90), Expect = 2e-13 Identities = 50/52 (96%), Gaps = 1/52 (2%) Strand=Plus/Minus Query 453 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 131 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATG-GTACTGGCAG 81 >seq304555 Length=13139 Score = 127 bits (140), Expect = 6e-27 Identities = 107/131 (82%), Gaps = 3/131 (2%) Strand=Plus/Minus Query 89 GCCTGCTGCCT---TCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGA 145 ||||||| || ||||||||||||||| || |||||||||||||||||||||||| || Sbjct 3328 GCCTGCTTCCCACATCCTTGGATGTGGTAACCATTTCTCAGGCTCCCTCTCCGGAATTGA 3269 Query 146 ACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCTACCATCGAAAGTT 205 ||||| |||| || |||||||| | || |||||||| | |||||| ||||||| Sbjct 3268 ACCCTGATTCTCCATTACCCGTGGTCACTGTGGTAGGCGCAGAAAGTACCATTGAAAGTT 3209 Query 206 GATAGGGCAGA 216 ||||||||||| Sbjct 3208 GATAGGGCAGA 3198 Score = 123 bits (136), Expect = 7e-26 Identities = 196/273 (72%), Gaps = 11/273 (4%) Strand=Plus/Minus Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 ||||||||||||||||||||||| ||||||| |||| || ||||| || | || |||| Sbjct 3111 TTCTCAGGCTCCCTCTCCGGAATTGAACCCTGATTCTCCATTACCTGTGGTCACTGTGGT 3052 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 |||| | |||||| |||||||||||||||||| || |||| | || |||| | Sbjct 3051 AGGCGCAGAAAGTACCATTGAAAGTTGATAGGGCAGATGTTCAAATGCATCACCGCCATC 2992 Query 240 TCAAGGCCATGCGAT--TCGTTAAGTTATTATGAATCACC-AAGGAGCCCCG--AAG--G 292 || || || ||| | | ||||| || ||||| ||| |||| | ||| Sbjct 2991 ACAGGGTTGTGTGATCAGCCCGAGGTTATCTAGAGTCACCAAAGCAGCCAGGGCAAGCCC 2932 Query 293 GCGTTGGTTTTTTATCTAATAAAT--ACACCCCTTCCGAAGTC-GGGGTTTTTAGCATGT 349 | ||||| |||| ||| |||||| | | || || ||| | | | | |||||| Sbjct 2931 GGGTTGG-TTTTGGTCTGATAAATGAATGCATCTCTGGAGGTCAGTGCTCATCGGCATGT 2873 Query 350 ATTAGCTCTAGAATTACCACGGTTATCCATGTA 382 |||||||||||||||||||| |||||||| ||| Sbjct 2872 ATTAGCTCTAGAATTACCACAGTTATCCAAGTA 2840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497049272320