Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21] 883,920 sequences; 1,404,220,341 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq39449 116 3e-21 seq321951 89.7 4e-13 seq236318 87.8 1e-12 >seq39449 Length=2664 Score = 116 bits (128), Expect = 3e-21 Identities = 125/162 (77%), Gaps = 4/162 (2%) Strand=Plus/Plus Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108 ||| ||||| ||||| |||||||| || || ||||| |||||||||| ||||| || Sbjct 1369 GGTGTACTCCACAATCTCGGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTG 1428 Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168 || ||||| || ||||| | |||||||| | |||||| || || || ||||| || Sbjct 1429 GTTGCTCTTCCGGTTGCAGGAGTCCTTGTAGAGCATGTAGGGTGTCCCCGTCTCCGTCTG 1488 Query 66169 GGACTCAATGATGGCGTGCCAAAGAGC-GC-GTGCCTTCACC 66208 |||||||||||||||| || ||||| || | ||||||||| Sbjct 1489 AGACTCAATGATGGCGTACC--AGAGCTGCTGGGCCTTCACC 1528 >seq321951 Length=5427 Score = 89.7 bits (98), Expect = 4e-13 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || || || || |||||||| ||||| || || || || || | |||||||| | Sbjct 582 CATGAAGAGGTCCGGGATCCAGAGCGCGTAAAAAAGGTCCCGAGCCCTCTGCTCCTCCTT 641 Query 66400 GCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTA 66459 ||| || || |||||| || |||||||||||||| ||||| || |||||||| Sbjct 642 CCCGGTGTTCTTCTTCAAGTCAAGAAACTCAAAGATGTCAAAGTGCCAGGGCTCCAGGTA 701 Query 66460 GATGGCGAA 66468 ||||||||| Sbjct 702 GATGGCGAA 710 >seq236318 Length=20466 Score = 87.8 bits (96), Expect = 1e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| || || | ||||| | || || || |||||||| |||||||||| Sbjct 4286 TGGAGCGATTCAGCCAAGAAATACAAGTCACAGAAGCACGCTGTTTCTATGGCTTCCAGA 4345 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 |||||||||||||| | || || || ||||| ||| | || || ||||| ||||| | || Sbjct 4346 TTGCCATGGAGAATATTCATTCAGAAATGTATAGTTTACTTATTGATACTTACATTAAGG 4405 Query 61376 A 61376 | Sbjct 4406 A 4406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 393285089388800