Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pantherophis_20guttatus_20[genbank_20GCA_5F001185365.1_202015-07-21]
883,920 sequences; 1,404,220,341 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq39449 116 3e-21
seq321951 89.7 4e-13
seq236318 87.8 1e-12
>seq39449
Length=2664
Score = 116 bits (128), Expect = 3e-21
Identities = 125/162 (77%), Gaps = 4/162 (2%)
Strand=Plus/Plus
Query 66049 GGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTG 66108
||| ||||| ||||| |||||||| || || ||||| |||||||||| ||||| ||
Sbjct 1369 GGTGTACTCCACAATCTCGGTGCAGAGGTTGCTGCACTTGATGGTGCCCAGGTTCTGCTG 1428
Query 66109 ATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTG 66168
|| ||||| || ||||| | |||||||| | |||||| || || || ||||| ||
Sbjct 1429 GTTGCTCTTCCGGTTGCAGGAGTCCTTGTAGAGCATGTAGGGTGTCCCCGTCTCCGTCTG 1488
Query 66169 GGACTCAATGATGGCGTGCCAAAGAGC-GC-GTGCCTTCACC 66208
|||||||||||||||| || ||||| || | |||||||||
Sbjct 1489 AGACTCAATGATGGCGTACC--AGAGCTGCTGGGCCTTCACC 1528
>seq321951
Length=5427
Score = 89.7 bits (98), Expect = 4e-13
Identities = 97/129 (75%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399
||| || || || || |||||||| ||||| || || || || || | |||||||| |
Sbjct 582 CATGAAGAGGTCCGGGATCCAGAGCGCGTAAAAAAGGTCCCGAGCCCTCTGCTCCTCCTT 641
Query 66400 GCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTA 66459
||| || || |||||| || |||||||||||||| ||||| || ||||||||
Sbjct 642 CCCGGTGTTCTTCTTCAAGTCAAGAAACTCAAAGATGTCAAAGTGCCAGGGCTCCAGGTA 701
Query 66460 GATGGCGAA 66468
|||||||||
Sbjct 702 GATGGCGAA 710
>seq236318
Length=20466
Score = 87.8 bits (96), Expect = 1e-12
Identities = 92/121 (76%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315
|||| || ||| || || | ||||| | || || || |||||||| ||||||||||
Sbjct 4286 TGGAGCGATTCAGCCAAGAAATACAAGTCACAGAAGCACGCTGTTTCTATGGCTTCCAGA 4345
Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375
|||||||||||||| | || || || ||||| ||| | || || ||||| ||||| | ||
Sbjct 4346 TTGCCATGGAGAATATTCATTCAGAAATGTATAGTTTACTTATTGATACTTACATTAAGG 4405
Query 61376 A 61376
|
Sbjct 4406 A 4406
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 393285089388800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |