Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24]
19,904 sequences; 2,202,483,752 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq7601 187 4e-45
seq3736 140 5e-31
seq6134 116 6e-24
seq2047 96.9 5e-18
seq4253 78.8 1e-12
>seq7601
Length=1688416
Score = 187 bits (206), Expect = 4e-45
Identities = 185/234 (79%), Gaps = 4/234 (2%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||| | || ||||||||||||| ||||| ||| |||||| |||||| |
Sbjct 1087366 GTACAAAGGGCAGGGGCTTAATCAACGCGAGCTT-ATGACCCGCACTTACTGGGAATT-C 1087309
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119
|||||| | | || ||||||||| | ||||||||||||| ||||| | ||
Sbjct 1087308 CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTT 1087249
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179
||||| |||||||||| ||| | | || || ||| ||||||||||||||||||
Sbjct 1087248 ACCCGCACCTGTCGGCGTAGGGTAGACACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCA 1087189
Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233
|||| | |||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 1087188 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 1087136
>seq3736
Length=3466063
Score = 140 bits (154), Expect = 5e-31
Identities = 170/224 (76%), Gaps = 6/224 (3%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||| ||||||||| || |||||| |||||| ||||| ||| |||||| |||||| |
Sbjct 1739992 GTACAAAAGGCAGGGACTTAATCAACGTGAGCTT-ATGACCCGCACTTACTGGGAATT-C 1740049
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119
||| || | | || ||||||||| ||||||||||||| ||||| || ||
Sbjct 1740050 CTCATTCATGGGGAATAATTGCAATCCCTAATCCCCATCACGAACGGGGTTCAACAGGTT 1740109
Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACA-TCAGTGTAGCGCGCGTGC 178
||| | | |||||||| ||| | | || | | || || |||||||||||| |||||
Sbjct 1740110 ACCTGCAGCTGTCGGCATAGGGTAGACACATGCT-AAGCCAGTCAGTGTAGCGCACGTGC 1740168
Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222
|||| |||| |||||| || ||||||||||||||| |||||
Sbjct 1740169 AGCCCCAGACATTTAAGGGTATTACAGACCTGTTATTG-CTCAA 1740211
>seq6134
Length=3911284
Score = 116 bits (128), Expect = 6e-24
Identities = 167/227 (74%), Gaps = 14/227 (6%)
Strand=Plus/Minus
Query 5 AAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCG 64
||||||||||||| || ||||| | |||| ||||| | | |||||| |||||| ||||
Sbjct 2390278 AAAGGGCAGGGACTTAATCAACACATGCTT-ATGACCCACACTTACTGGGAATT-CCTCA 2390221
Query 65 TTGAAGACCAACAATTGCAATGATCTA-TCCCCATCACGATGAAAT----TTCAAAGA-T 118
|| | | || ||||||||| ||| ||||||| || |||| ||||| | |
Sbjct 2390220 TTCATGGGGAATAATTGCAATCC-CTAGTCCCCATTAC----AAATGGGGTTCAACGGGT 2390166
Query 119 TACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178
|||||| | ||| ||| ||| | | || | ||| |||||||||||||| |||
Sbjct 2390165 TACCCGCAGTTGTTGGCATAGGGTAGACACACACTGAGCCAGTCAGTGTAGCGCGCATGC 2390106
Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225
|||| | |||||||||||||||||||||||||||| ||||| ||
Sbjct 2390105 AGCCCCAGATATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT 2390060
>seq2047
Length=1246781
Score = 96.9 bits (106), Expect = 5e-18
Identities = 104/133 (78%), Gaps = 11/133 (8%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
||||||||||||||||| || |||| |||||||| ||||| ||| |||||| |||| |||
Sbjct 851982 GTACAAAGGGCAGGGACTTAATCAATGCGAGCTT-ATGACCCGCACTTACTGGGAA-TTC 851925
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT----TTCAA-A 115
|||||| | | || ||||||||| | ||||||||||| |||| |||||
Sbjct 851924 CTCGTTCATCAGGAATAATTGCAATCCCCGATCCCCATCAC----AAATGGGGTTCAACT 851869
Query 116 GATTACCCGGACC 128
||||||||| |||
Sbjct 851868 GATTACCCGCACC 851856
>seq4253
Length=12523547
Score = 78.8 bits (86), Expect = 1e-12
Identities = 104/143 (73%), Gaps = 1/143 (1%)
Strand=Plus/Plus
Query 74 AACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TTACCCGGACCTGTC 132
|| |||| |||| | | || |||||||| ||||| | ||||||| ||||||
Sbjct 968724 AATAATTACAATCCCCGACCCACATCACGAATGGGGTTCAACGGGTTACCCGCACCTGTT 968783
Query 133 GGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCT 192
||| ||| | | || | |||| ||||||||| ||| |||| | || | || |||
Sbjct 968784 GGCGTAGGGTAGACACACACTGAACCAGTCAGTGTAGTGCGTGTGCAGGCCCGGACTTCT 968843
Query 193 AAGGGCATCACAGACCTGTTATT 215
|||||||||||||||||||||||
Sbjct 968844 AAGGGCATCACAGACCTGTTATT 968866
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 751854999360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |