Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24] 19,904 sequences; 2,202,483,752 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq7601 187 4e-45 seq3736 140 5e-31 seq6134 116 6e-24 seq2047 96.9 5e-18 seq4253 78.8 1e-12 >seq7601 Length=1688416 Score = 187 bits (206), Expect = 4e-45 Identities = 185/234 (79%), Gaps = 4/234 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||| | || ||||||||||||| ||||| ||| |||||| |||||| | Sbjct 1087366 GTACAAAGGGCAGGGGCTTAATCAACGCGAGCTT-ATGACCCGCACTTACTGGGAATT-C 1087309 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | | || ||||||||| | ||||||||||||| ||||| | || Sbjct 1087308 CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTT 1087249 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||||| |||||||||| ||| | | || || ||| |||||||||||||||||| Sbjct 1087248 ACCCGCACCTGTCGGCGTAGGGTAGACACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCA 1087189 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||| | |||||||||||||||||||||||||||||| ||||| || ||||| Sbjct 1087188 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCTCGGGTGGC 1087136 >seq3736 Length=3466063 Score = 140 bits (154), Expect = 5e-31 Identities = 170/224 (76%), Gaps = 6/224 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||| ||||||||| || |||||| |||||| ||||| ||| |||||| |||||| | Sbjct 1739992 GTACAAAAGGCAGGGACTTAATCAACGTGAGCTT-ATGACCCGCACTTACTGGGAATT-C 1740049 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAA-AGATT 119 ||| || | | || ||||||||| ||||||||||||| ||||| || || Sbjct 1740050 CTCATTCATGGGGAATAATTGCAATCCCTAATCCCCATCACGAACGGGGTTCAACAGGTT 1740109 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACA-TCAGTGTAGCGCGCGTGC 178 ||| | | |||||||| ||| | | || | | || || |||||||||||| ||||| Sbjct 1740110 ACCTGCAGCTGTCGGCATAGGGTAGACACATGCT-AAGCCAGTCAGTGTAGCGCACGTGC 1740168 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAA 222 |||| |||| |||||| || ||||||||||||||| ||||| Sbjct 1740169 AGCCCCAGACATTTAAGGGTATTACAGACCTGTTATTG-CTCAA 1740211 >seq6134 Length=3911284 Score = 116 bits (128), Expect = 6e-24 Identities = 167/227 (74%), Gaps = 14/227 (6%) Strand=Plus/Minus Query 5 AAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTCCTCG 64 ||||||||||||| || ||||| | |||| ||||| | | |||||| |||||| |||| Sbjct 2390278 AAAGGGCAGGGACTTAATCAACACATGCTT-ATGACCCACACTTACTGGGAATT-CCTCA 2390221 Query 65 TTGAAGACCAACAATTGCAATGATCTA-TCCCCATCACGATGAAAT----TTCAAAGA-T 118 || | | || ||||||||| ||| ||||||| || |||| ||||| | | Sbjct 2390220 TTCATGGGGAATAATTGCAATCC-CTAGTCCCCATTAC----AAATGGGGTTCAACGGGT 2390166 Query 119 TACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 |||||| | ||| ||| ||| | | || | ||| |||||||||||||| ||| Sbjct 2390165 TACCCGCAGTTGTTGGCATAGGGTAGACACACACTGAGCCAGTCAGTGTAGCGCGCATGC 2390106 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACT 225 |||| | |||||||||||||||||||||||||||| ||||| || Sbjct 2390105 AGCCCCAGATATCTAAGGGCATCACAGACCTGTTATTG-CTCAATCT 2390060 >seq2047 Length=1246781 Score = 96.9 bits (106), Expect = 5e-18 Identities = 104/133 (78%), Gaps = 11/133 (8%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || |||| |||||||| ||||| ||| |||||| |||| ||| Sbjct 851982 GTACAAAGGGCAGGGACTTAATCAATGCGAGCTT-ATGACCCGCACTTACTGGGAA-TTC 851925 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAAT----TTCAA-A 115 |||||| | | || ||||||||| | ||||||||||| |||| ||||| Sbjct 851924 CTCGTTCATCAGGAATAATTGCAATCCCCGATCCCCATCAC----AAATGGGGTTCAACT 851869 Query 116 GATTACCCGGACC 128 ||||||||| ||| Sbjct 851868 GATTACCCGCACC 851856 >seq4253 Length=12523547 Score = 78.8 bits (86), Expect = 1e-12 Identities = 104/143 (73%), Gaps = 1/143 (1%) Strand=Plus/Plus Query 74 AACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TTACCCGGACCTGTC 132 || |||| |||| | | || |||||||| ||||| | ||||||| |||||| Sbjct 968724 AATAATTACAATCCCCGACCCACATCACGAATGGGGTTCAACGGGTTACCCGCACCTGTT 968783 Query 133 GGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCT 192 ||| ||| | | || | |||| ||||||||| ||| |||| | || | || ||| Sbjct 968784 GGCGTAGGGTAGACACACACTGAACCAGTCAGTGTAGTGCGTGTGCAGGCCCGGACTTCT 968843 Query 193 AAGGGCATCACAGACCTGTTATT 215 ||||||||||||||||||||||| Sbjct 968844 AAGGGCATCACAGACCTGTTATT 968866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751854999360