Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24] 19,904 sequences; 2,202,483,752 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq779 178 2e-42 seq6134 167 4e-39 seq3736 154 3e-35 seq3206 109 1e-21 seq19881 80.6 5e-13 >seq779 Length=3640918 Score = 178 bits (196), Expect = 2e-42 Identities = 208/276 (75%), Gaps = 4/276 (1%) Strand=Plus/Plus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGA-CTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| |||| |||| | | || | | | | | |||||||||||||||||||||||| Sbjct 3615589 ATGCTCTTAACTGAGTGTCCTGCGGGGTCCGAAGCGTTTACTTTGAAAAAATTAGAGTGT 3615648 Query 98 TCAAAGCAGGCCTTT-GCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTT 156 ||||||||||| | || |||||| ||| |||||||| ||||||||| | ||||| Sbjct 3615649 TCAAAGCAGGCTGGTCGCCGGAATACTCCAGCTAGGAATAATGGAATAGGAC-TCCGGTT 3615707 Query 157 CTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGT 216 ||||||||||||||| | || | | |||||||| ||||| | |||||| | || Sbjct 3615708 CTATTTTGTTGGTTTTCGGAACTGGGGCCATGATTAAGAGGGACGGCCGGGGGCATTCGT 3615767 Query 217 ATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTT 276 ||| | |||||||||||||||||| ||||| || | |||||||| || Sbjct 3615768 ATTGTGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAAAGCGAAAGCATT 3615827 Query 277 CACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 ||||| |||||||||||||||| |||||||||| Sbjct 3615828 TGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGT 3615862 >seq6134 Length=3911284 Score = 167 bits (184), Expect = 4e-39 Identities = 184/240 (77%), Gaps = 5/240 (2%) Strand=Plus/Plus Query 75 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTG-CTCGAATACATTAGCATGGA 133 |||||||||||||||||||||||||||||||||| | || |||||| ||| ||| Sbjct 2389394 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCTGGTCACTGGAATACTCCAGCTAGGA 2389453 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193 ||||| ||||||||| | || ||||||||||||||||| | || | | |||||||| Sbjct 2389454 ATAATGGAATAGGAC-TCCGATTCTATTTTGTTGGTTTTGA--ACTGGAGCCATGATTAA 2389510 Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGA 253 ||||| || |||||| | ||||| || |||||||||||||||||| | | Sbjct 2389511 GAGGGACAGCCGGGGGCATTTGTATTGTGCTGCTAGAGGTGAAATTCTTGGACCAACGCA 2389570 Query 254 AGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 ||| || | | |||||| || ||||| |||||||||||||||| ||||||||||| Sbjct 2389571 AGATGGACCAAAGTGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAGTT 2389629 >seq3736 Length=3466063 Score = 154 bits (170), Expect = 3e-35 Identities = 181/241 (75%), Gaps = 3/241 (1%) Strand=Plus/Minus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCT-TTGCTCGAATACATTAGCATGG 132 ||||||||||||||||||||||||||||||||||| |||| |||||| | | || Sbjct 1740874 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCTGGTTGCCAGAATACTCCAACTAGG 1740815 Query 133 AATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTA 192 |||||| ||||||||| | ||||||||||||||||||| | | || | ||||||| Sbjct 1740814 AATAATGGAATAGGAC-TCTGGTTCTATTTTGTTGGTTTTTGGAACTCGGGCCATGATTA 1740756 Query 193 ATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTG 252 | |||||| | ||||| | ||||| | | |||||||||||||||| | Sbjct 1740755 AGAGGGATGGCTGGGGGCATTCGTATTGTGCCGCTACAGGTGAAATTCTTGGAACGGTGC 1740696 Query 253 AAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 |||| || | | |||||| || ||||| |||||||||||||||| |||||||| | Sbjct 1740695 AAGATGGACCAAAGTGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAACGAAAAT 1740637 Query 313 T 313 | Sbjct 1740636 T 1740636 >seq3206 Length=930894 Score = 109 bits (120), Expect = 1e-21 Identities = 171/240 (71%), Gaps = 10/240 (4%) Strand=Plus/Plus Query 74 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGAATACATTAGCATGGA 133 ||||||||||||||||||| | |||||||||||| || | || | || ||| Sbjct 17844 TTTACTTTGAAAAAATTAGTTT-TTCAAAGCAGGC------TC-ATCACTTCAGTTAGGA 17895 Query 134 ATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAA 193 ||||| ||||||||| | |||||||| |||| |||| || || | |||||||| Sbjct 17896 ATAATGGAATAGGAC-TCTAGTTCTATTGTGTTAGTTTTCAGAACTCGGGCCATGATTAA 17954 Query 194 TAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGA 253 |||||| | |||||| | ||||| | |||| |||||| |||||| | Sbjct 17955 GAGGGATGGCCGGGGGCATTCGTATTGTGCTTCTAGAGTTGAAATCCTTGGACCAGCACA 18014 Query 254 AGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTT 313 ||| || | | |||||| || |||||| |||||||||||||||| ||| ||||||| Sbjct 18015 AGATAGACCAAAGAGAAAGCATTTACCAAGAATGTTTTCATTAATCA-AGAATGAAAGTT 18073 >seq19881 Length=10700766 Score = 80.6 bits (88), Expect = 5e-13 Identities = 101/135 (75%), Gaps = 3/135 (2%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAG-CCAGGACTTTTACTTTGAAAAAATTAGAGTGT 97 |||| ||| |||| |||| | | | | ||| | |||| |||||||||| | | ||| Sbjct 9797457 ATGCTCTTAACTGAGTGTCCTGCAGGGTCCAAAGCATTTATTTTGAAAAAAAAATACTGT 9797398 Query 98 TCAAAGCAGGC-CTTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTT 156 ||||||||||| | || |||||| ||| |||||||| ||||||||| | |||| Sbjct 9797397 TCAAAGCAGGCTGATCGCCAGAATACTCCAGCTAGGAATAATGGAATAGGAC-TCTGGTT 9797339 Query 157 CTATTTTGTTGGTTT 171 ||||||||||| ||| Sbjct 9797338 CTATTTTGTTGTTTT 9797324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915017838592