Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24] 19,904 sequences; 2,202,483,752 total letters Query= AAMG01000750.1 Length=102 Score E Sequences producing significant alignments: (Bits) Value seq4243 176 2e-42 seq5682 125 3e-27 seq887 98.7 5e-19 seq5572 86.0 3e-15 >seq4243 Length=1141289 Score = 176 bits (194), Expect = 2e-42 Identities = 100/102 (98%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 800582 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 800523 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 ||||||||||| ||||||||||||||||||| |||||||||| Sbjct 800522 CCGAATCCCCGTCCCGCGGTGGGGCGCGGGAAATGTGGCGTA 800481 >seq5682 Length=3350749 Score = 125 bits (138), Expect = 3e-27 Identities = 89/102 (87%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||| Sbjct 2479060 GGAAAAGAAACTAACCAGGATTCCCTCAATAATGGTGAGTGAACAGGGAAGAGCCCAGCA 2479001 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 ||||| ||| | | | | |||||| |||||| ||||||| || Sbjct 2479000 CCGAACCCCTGTCTCACAGTGGGGTGCGGGAAATGTGGCATA 2478959 Score = 122 bits (134), Expect = 4e-26 Identities = 88/102 (86%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||| ||||||||||| |||||||||||||||| ||||||||||| |||||||||||| Sbjct 2478626 GGAAAATAAACTAACCAGAATTCCCTCAGTAACGGTGAGTGAACAGGAAAGAGCCCAGCG 2478567 Query 61 CCGAATCCCCGCCCCGCGGTGGGGCGCGGGACATGTGGCGTA 102 | |||||||| ||||| |||||| | || |||||| ||| Sbjct 2478566 CTGAATCCCCATCCCGCAGTGGGGTATGAGAAATGTGGTGTA 2478525 >seq887 Length=1640475 Score = 98.7 bits (108), Expect = 5e-19 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 |||||||||||||||||| ||||||||| || || ||||||||||||||||||||||| Sbjct 1564162 GGAAAAGAAACTAACCAGCGTTCCCTCAGCAATGGTGAGTGAACAGGGAAGAGCCCAGCA 1564221 Query 61 CCGAATCCCCGCCCCGC 77 ||||||||| ||||| Sbjct 1564222 TCGAATCCCCATCCCGC 1564238 >seq5572 Length=3134962 Score = 86.0 bits (94), Expect = 3e-15 Identities = 49/50 (98%), Gaps = 0/50 (0%) Strand=Plus/Minus Query 31 AACGGCGAGTGAACAGGGAAGAGCCCAGCGCCGAATCCCCGCCCCGCGGT 80 ||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 2980552 AACGGCGAGTGAACAGGGAAGAGCCCAGCGCCGAATCCCCGTCCCGCGGT 2980503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 230357007360