Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24] 19,904 sequences; 2,202,483,752 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq3736 223 6e-56 seq6134 219 7e-55 seq7601 179 6e-43 seq779 170 3e-40 seq86 168 1e-39 seq3207 125 1e-26 seq19863 122 1e-25 seq3901 113 7e-23 seq419 98.7 2e-18 seq5590 89.7 8e-16 seq3262 89.7 8e-16 seq4253 77.0 5e-12 >seq3736 Length=3466063 Score = 223 bits (246), Expect = 6e-56 Identities = 201/248 (81%), Gaps = 6/248 (2%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||| ||||| |||| |||| |||||| || |||||||||||||||| | Sbjct 1740150 GTCAGTGTAGCGCACGTGCAGCCCCAGACATTTAAGGGTATTACAGACCTGTTATTGC-T 1740208 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCA-TAGT 133 ||| | | |||||| | |||| | |||||||||||||| | |||| |||| ||| Sbjct 1740209 CAATAT-CAGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGACACCGACCACTAGG 1740267 Query 134 CG---ATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAA 190 | ||| ||| |||||| | | |||| |||||||||| |||||||||||||||| Sbjct 1740268 GGGTCATGTAACTAGTTAGCATGCCAGAGTCTTGTTCGTTATCAGAATTAACCAGACAAA 1740327 Query 191 TCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATC 250 ||||||||||||||||||| || |||||| |||||||| |||||| ||||||||||||| Sbjct 1740328 TCACTCCACCAACTAAGAATGGTCATGCAATACCACCCACAGAATCGAGAAAGAGCTATC 1740387 Query 251 AATCTGTC 258 |||||||| Sbjct 1740388 AATCTGTC 1740395 >seq6134 Length=3911284 Score = 219 bits (242), Expect = 7e-55 Identities = 202/249 (81%), Gaps = 9/249 (4%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||| ||| |||| | ||||||||||||||||||||||||||||| | Sbjct 2390124 GTCAGTGTAGCGCGCATGCAGCCCCAGATATCTAAGGGCATCACAGACCTGTTATTGC-T 2390066 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAAC--CATAG 132 ||| || || ||||| | |||| | |||||||||||||| | | || || | | | Sbjct 2390065 CAATCTCAGAT-GGCTGAATGCCACTTGTCCCTCTAAGAAGTAGGACGCCGACTGCTTGG 2390007 Query 133 --TCG-ATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAA 189 ||| || ||| |||||| | | ||||||||||||||| ||||||||||||||| Sbjct 2390006 GGTCGCATAC--CTAATTAGCATGCCAGAGTCTCGTTCGTTATCAGAATTAACCAGACAA 2389949 Query 190 ATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTAT 249 ||| ||||||||||||| || ||||||||||||| ||||| ||||||||||||| ||||| Sbjct 2389948 ATCGCTCCACCAACTAAAAAGGGCCATGCACCACTACCCACAGAATCAAGAAAGCGCTAT 2389889 Query 250 CAATCTGTC 258 | ||||||| Sbjct 2389888 CGATCTGTC 2389880 >seq7601 Length=1688416 Score = 179 bits (198), Expect = 6e-43 Identities = 182/244 (75%), Gaps = 40/244 (16%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| | Sbjct 1087208 GTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 1087150 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTC 134 ||| || | |||||| | |||| | |||||||||| ||| Sbjct 1087149 CAATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAAAAGT------------------ 1087109 Query 135 GATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCAC 194 ||| | |||| ||||||||| |||||||||||||||||| | Sbjct 1087108 --TGGAG------------------TCTCATTCGTTATCAGAATTAACCAGACAAATCGC 1087069 Query 195 TCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATC 254 ||||||||||||||| ||||| |||||||||||| |||||| ||||||||||||||||| Sbjct 1087068 TCCACCAACTAAGAATAGCCATTCACCACCACCCACAGAATCGAGAAAGAGCTATCAATC 1087009 Query 255 TGTC 258 |||| Sbjct 1087008 TGTC 1087005 >seq779 Length=3640918 Score = 170 bits (188), Expect = 3e-40 Identities = 108/117 (92%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | |||||||||||||||||||||||||||||||||| |||||||| Sbjct 3616230 CTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 3616171 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| Sbjct 3616170 ACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTATCAATCTGTC 3616114 >seq86 Length=650521 Score = 168 bits (186), Expect = 1e-39 Identities = 163/206 (79%), Gaps = 10/206 (5%) Strand=Plus/Minus Query 59 AGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCA 118 |||||||||||||| |||| || | |||||| | |||| | ||||||||||||||| Sbjct 593024 AGACCTGTTATTGC-TCAATCT-CGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGCTG 592967 Query 119 GCCACCAACCATAGTCGATGGGG------CTATTTAGCAGGTTAAGGTCTCGTTCGTTAT 172 | |||| || | |||| || ||| |||||| | | |||| |||| |||| Sbjct 592966 GACACCGAC--TGCTCGAGGGTCACGTAACTAGTTAGCATGCCAGAGTCTTGTTCATTAT 592909 Query 173 CGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAG 232 |||||||||||||||| || ||||||||||||||||| | |||| ||||||||||| || Sbjct 592908 GGGAATTAACCAGACAAGTCGCTCCACCAACTAAGAACAGTCATGTACCACCACCCACAG 592849 Query 233 AATCAAGAAAGAGCTATCAATCTGTC 258 |||| ||||||||||||||||||||| Sbjct 592848 AATCGAGAAAGAGCTATCAATCTGTC 592823 Score = 113 bits (124), Expect = 7e-23 Identities = 79/90 (88%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 169 TTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCC 228 |||| | |||||||||||||| | |||||||||| ||||||||||||||||||||| || Sbjct 592685 TTATGGAAATTAACCAGACAAGTTGCTCCACCAACGAAGAACGGCCATGCACCACCATCC 592744 Query 229 ATAGAATCAAGAAAGAGCTATCAATCTGTC 258 | ||||| ||||||||||||||| ||||| Sbjct 592745 ACAGAATTTAGAAAGAGCTATCAACCTGTC 592774 >seq3207 Length=7324543 Score = 125 bits (138), Expect = 1e-26 Identities = 88/100 (88%), Gaps = 3/100 (3%) Strand=Plus/Minus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 |||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||| Sbjct 7228144 GTCTCGTT---TATCGGAATTAACCAGACAAATCGCTCCACCAACTAAGACTGGCCATGC 7228088 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||| |||| |||||| ||| |||||||| |||||||| Sbjct 7228087 ACCACTGCCCACAGAATCGAGAGAGAGCTATTAATCTGTC 7228048 >seq19863 Length=3510020 Score = 122 bits (134), Expect = 1e-25 Identities = 87/100 (87%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 ||||||||| |||| |||||||||||||||||| ||| ||||| || ||| ||||||| Sbjct 2680781 GTCTCGTTCATTATTGGAATTAACCAGACAAATTGCTCTACCAATGAAAAACAGCCATGC 2680840 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||| || |||||||||||||| |||||| |||||| Sbjct 2680841 ACCACCACTCACAGAATCAAGAAAGAACTATCACTCTGTC 2680880 >seq3901 Length=16024077 Score = 113 bits (124), Expect = 7e-23 Identities = 82/95 (86%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 ||||| ||| |||| ||||||||||||||| ||||||||||||||||||||| || |||| Sbjct 11469580 GTCTCATTCATTATAGGAATTAACCAGACATATCACTCCACCAACTAAGAACAGCTATGC 11469521 Query 219 ACCACCACCCATAGAATCAAGAAAGAGCTATCAAT 253 | ||||| ||| ||||| ||| || ||||||||| Sbjct 11469520 ATCACCATCCACAGAATTGAGAGAGCGCTATCAAT 11469486 >seq419 Length=3830642 Score = 98.7 bits (108), Expect = 2e-18 Identities = 74/87 (85%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 172 TCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATA 231 || |||||||||| || | |||||||||| |||| ||| ||||||||||| || ||| | Sbjct 3508432 TCAGAATTAACCACACCACTCACTCCACCTACTATGAAGAGCCATGCACCAGCATCCACA 3508491 Query 232 GAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||| |||||||||||||||||| Sbjct 3508492 AAATCAAGGAAGAGCTATCAATCTGTC 3508518 >seq5590 Length=9547597 Score = 89.7 bits (98), Expect = 8e-16 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||| | || | ||||||||| |||| |||||||||||||||||| |||||||| Sbjct 4790813 CTAGTTAGTATGTCAGAGTCTCGTTCATTATTGGAATTAACCAGACAAATTGCTCCACCA 4790872 Query 202 ACTAAGAACGGCCATGC 218 |||||||| |||||||| Sbjct 4790873 ACTAAGAATGGCCATGC 4790889 >seq3262 Length=6973445 Score = 89.7 bits (98), Expect = 8e-16 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | ||||||||||||||| ||||||| ||||||||| |||| ||| Sbjct 3885497 CTAGTTAGCATGCCAGAGTCTCGTTCGTTATCAGAATTAAGCAGACAAATTGCTCCCCCA 3885438 Query 202 ACTAAGAACGGCCATGC 218 ||||||||||||||||| Sbjct 3885437 ACTAAGAACGGCCATGC 3885421 >seq4253 Length=12523547 Score = 77.0 bits (84), Expect = 5e-12 Identities = 76/96 (79%), Gaps = 2/96 (2%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 |||||||||| ||| |||| | || | || |||||||||||||||||||||||||| || Sbjct 968811 GTCAGTGTAGTGCGTGTGCAGGCCCGGACTTCTAAGGGCATCACAGACCTGTTATT-TCT 968869 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTA 110 || | || |||||| | |||| | ||||| ||| Sbjct 968870 CAGTC-TCGGGTGGCTGAATGCCACTTGTCCCACTA 968904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796646361024