Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24] 19,904 sequences; 2,202,483,752 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq6734 343 3e-92 seq5267 334 1e-89 seq6641 313 4e-83 seq1042 269 5e-70 seq5675 215 9e-54 seq3607 179 6e-43 seq19889 163 5e-38 seq795 140 6e-31 seq7429 109 9e-22 seq4352 107 3e-21 seq5566 98.7 2e-18 seq1958 95.1 2e-17 seq7388 86.0 1e-14 seq7908 78.8 2e-12 >seq6734 Length=98203 Score = 343 bits (380), Expect = 3e-92 Identities = 254/295 (86%), Gaps = 1/295 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| |||| | || ||||||||||||||||||||||||||||| Sbjct 8168 TACTGAGCAGGATTACTATTGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 8227 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 8228 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 8287 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 8288 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 8347 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||||||||||||||| |||||| || Sbjct 8348 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 8407 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 | ||| | | | |||||||| ||||| | |||||| ||| |||||||| Sbjct 8408 TAAAACCCAAAAAGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTCA 8462 >seq5267 Length=399842 Score = 334 bits (370), Expect = 1e-89 Identities = 252/295 (85%), Gaps = 1/295 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| |||| | || ||||||||||||||||||||||||||||| Sbjct 22587 TACTGAGCAGGATTACTATTGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 22528 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | |||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 22527 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 22468 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||| |||| |||| Sbjct 22467 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTTGCTA 22408 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| |||||||||||||||||||||||||||||||||| |||||| || Sbjct 22407 TGAACGCTTGGCCTCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 22348 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 | ||| | | | |||||||| ||||| | |||||| ||| |||||||| Sbjct 22347 TAAAACCCAAAAAGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTCA 22293 >seq6641 Length=1558306 Score = 313 bits (346), Expect = 4e-83 Identities = 247/295 (84%), Gaps = 1/295 (0%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||| ||| | ||||| |||| | || |||||||||||||||||||||||| || | Sbjct 1147488 TACTGAGCAGGATTACTATTGCAACAACACATCATCAGTAGGGTAAAACTAACCTCTCAC 1147547 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | ||||||||||||||| ||||| |||||||||||||||||||||||||||||||| | Sbjct 1147548 ACGACGGTCTAAACCCAACTCACATTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 1147607 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1147608 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 1147667 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 |||||||||||| ||||||||||||||||||||||| ||||||||||| |||||| || Sbjct 1147668 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGATAACTTTTCTGACACCTCCTTCC 1147727 Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 | ||| | | | ||||||| ||||| ||||||| || |||||||| Sbjct 1147728 TAAAACCCAAAAAGTCAGAAGGATCATGAGGCCCTGCTTTCATAGTCTGTATTCA 1147782 >seq1042 Length=3728125 Score = 269 bits (298), Expect = 5e-70 Identities = 176/194 (91%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| Sbjct 1665614 ATCAGTAGGGTAAAACTAACCTGTCTCACGATGGTCTAAACCCAGCTCACGTTCCCTATT 1665555 Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152 |||||||||||||||| |||| |||||||||||| ||||||||||||||||||| Sbjct 1665554 AGTGGGTGAACAATCCCGTGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGACA 1665495 Query 153 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 212 | |||||||||||||||||| |||||| ||||| ||||| |||||| ||||||||||||| Sbjct 1665494 TTGAAGGATCAAAAAGCAACATCGCTAAGAACGATTGGCCGCCACATGCCAGTTATCCCT 1665435 Query 213 GTGGTAACTTTTCT 226 ||||||| |||||| Sbjct 1665434 GTGGTAATTTTTCT 1665421 >seq5675 Length=4718562 Score = 215 bits (238), Expect = 9e-54 Identities = 193/242 (80%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112 || ||||| ||| ||||| |||||| | |||||||||| ||||||||| |||||| Sbjct 1609628 CTATCTCACGACAGTCTAGCCCCAGCGATCTAGCCCTATTAGTAGGTGAACAACCCAACG 1609569 Query 113 CTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAAC 172 || |||||||||||| |||||||||||||||||||||||||||||||||||| || Sbjct 1609568 TTTGGTGAATTCTGCTTCATAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGAC 1609509 Query 173 GTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACC 232 |||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||| Sbjct 1609508 ATCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCTCTGTGGTAACTTTTCTAACACC 1609449 Query 233 TCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATT 292 || | | ||| | | | ||||||| ||||| ||||| |||| |||||| Sbjct 1609448 TCCTTCTTAAAACCCAAAAAGTCAGAAGGATCATGAGGCCTTGCTTTCCTGGTCTGTATT 1609389 Query 293 CA 294 || Sbjct 1609388 CA 1609387 >seq3607 Length=4643123 Score = 179 bits (198), Expect = 6e-43 Identities = 162/203 (80%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 34 TCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT-- 91 ||||||| ||||||||||||||||||| | ||||||| || |||||| | | || | Sbjct 277159 TCAGTAGCGTAAAACTAACCTGTCTCACCATGGTCTAACCCTAGCTCATGCACTCTCTCC 277100 Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151 |||||||||||||||||| |||| |||||||| || |||||||||||||| ||| Sbjct 277099 TAGTGGGTGAACAATCCAGTGCTTGGTGAATTCTGTATCTCAATGATAGGAAGAGCTGAC 277040 Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 || ||| ||| |||||| ||| |||||| | |||| |||||||| |||||| || Sbjct 277039 ATTATGGGACCAAGAAGCAATGTCACTATGATCATGTGGCCACCACAAGCAAGTTATACC 276980 Query 212 TGTGGTAACTTTTCTGGCACCTC 234 |||||||||||||||| |||||| Sbjct 276979 TGTGGTAACTTTTCTGACACCTC 276957 >seq19889 Length=1780165 Score = 163 bits (180), Expect = 5e-38 Identities = 143/177 (81%), Gaps = 1/177 (1%) Strand=Plus/Plus Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178 ||||||||||||| |||||| ||||||| |||||||||||||||||||| || ||||| Sbjct 1765909 GAATTCTGCTTCGTGATGATAAGAAGAGCTGACATCGAAGGATCAAAAAGTGACATCGCT 1765968 Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTA-TCCCTGTGGTAACTTTTCTGGCACCTCTAG 237 |||||| |||||| |||||||||||||| |||| ||||||||||||||| |||||| | Sbjct 1765969 ATGAACACTTGGCCACCACAAGCCAGTTATTCCCAGTGGTAACTTTTCTGACACCTCCTG 1766028 Query 238 CCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294 | |||| | | | ||||||| ||||| |||||||| || |||||||| Sbjct 1766029 TTTAAAATCCAAAAAGTCAGAAGGATCATGAGGCCCCACTTTCACAGTCTGTATTCA 1766085 >seq795 Length=6633642 Score = 140 bits (154), Expect = 6e-31 Identities = 98/112 (88%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||||||||||||||||||||||| || |||||||| |||||||| |||||| Sbjct 4491099 TCATCAGTAGGGTAAAACTAACCTGTCTCTCAACAGTCTAAACTCAGCTCACATTCCCTG 4491040 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGA 142 |||||||||||||||||||| |||| |||||||||||| ||||||||| Sbjct 4491039 TTAGTGGGTGAACAATCCAAAGCTTGGTGAATTCTGCTTCACAATGATAGGA 4490988 >seq7429 Length=6366847 Score = 109 bits (120), Expect = 9e-22 Identities = 140/186 (75%), Gaps = 14/186 (8%) Strand=Plus/Plus Query 52 CCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGT-GGGTGAACAATCCAA 110 |||| ||||| || |||||||||||||||| |||||||||||| ||||||| |||||| Sbjct 6100991 CCTG-CTCATAACTATCTAAACCCAGCTCACCTTCCCTATTAGTGGGGTGAATAATCCA- 6101048 Query 111 CGCTTAC---CGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAA 167 || || || |||||||| | |||||||| | || || || | ||||||| Sbjct 6101049 --CTCACTGGTGACTTCTGCTTTGCATGGATAGGAAAAACC--TCTCAAATGGTCAAAAA 6101104 Query 168 GCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTG 227 | || || || |||| |||| ||||||||| |||| |||| | | ||||||||| || Sbjct 6101105 GTGACATCACTGTGAATGCTTAGCTGCCACATGCCACTTAT---TCTTGTAACTTTT-TG 6101160 Query 228 GCACCT 233 ||||| Sbjct 6101161 ACACCT 6101166 >seq4352 Length=7768020 Score = 107 bits (118), Expect = 3e-21 Identities = 147/202 (73%), Gaps = 14/202 (7%) Strand=Plus/Minus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 |||||||| |||||||||||||||| | || |||| |||| |||| | |||||| | Sbjct 993517 ATCAGTAGAGTAAAACTAACCTGTCCCCTGGTAGTCTGAACCTAGCTTGCATTCCCTGAT 993458 Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152 ||||||||| |||||||| || |||| | || | ||| |||||||| || ||| Sbjct 993457 AGTGGGTGAGTAATCCAACAGTTGTA-AATTTTACT-CACAATGTTAGGAAGAACCAACA 993400 Query 153 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 212 ||||| |||||| | | || | || ||| ||||||||||||||| | Sbjct 993399 --GAAGGCTCAAAATAC--------TGTGTATGC--GGCCAGCACAAGCCAGTTATCTCC 993352 Query 213 GTGGTAACTTTTCTGGCACCTC 234 |||||||||||| || |||||| Sbjct 993351 GTGGTAACTTTTATGACACCTC 993330 >seq5566 Length=500826 Score = 98.7 bits (108), Expect = 2e-18 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 160 ATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAA 219 || ||||||| || | ||||||||||| |||| |||||||||||||||||||||||||| Sbjct 460064 ATAAAAAAGCGACATTGCTATGAACGCGTGGCCACCACAAGCCAGTTATCCCTGTGGTAA 460005 Query 220 CTTTTCTGGCACCT 233 |||||||| ||||| Sbjct 460004 CTTTTCTGACACCT 459991 >seq1958 Length=2249324 Score = 95.1 bits (104), Expect = 2e-17 Identities = 143/201 (71%), Gaps = 3/201 (1%) Strand=Plus/Plus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 |||||| | || |||| |||| || || || ||||||||||||||| || || || Sbjct 1851629 GTCATCTCTGGGAGAAAATAAACCAGTA-CAGGATGGTCTAAACCCAGCTTACATTTTCT 1851687 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 |||| |||||||||||||| || | ||||||||| | || ||||||| || | Sbjct 1851688 GTTAGCAGGTGAACAATCCAATAGTTGGCAAATTCTGCTGTGTGATAATAGGAACTGCTG 1851747 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 ||| || | | ||||||||| || || | || |||| | |||||| ||| | ||||| Sbjct 1851748 ACA--GAGATACCCAAAAGCAACATCACTGTAAATGCTTTGATGCCACCAGCTACTTATC 1851805 Query 210 CCTGTGGTAACTTTTCTGGCA 230 ||| | | ||| ||| || Sbjct 1851806 TTTGTATTGATTTTGCTGACA 1851826 >seq7388 Length=2766286 Score = 86.0 bits (94), Expect = 1e-14 Identities = 87/112 (78%), Gaps = 1/112 (1%) Strand=Plus/Plus Query 122 TTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATG 181 |||||| || ||||||| |||||| |||||| |||| ||||||| || | | |||||| Sbjct 2251691 TTCTGCCTCATAATGATAGCAAGAGCTGACATCAAAGGTTCAAAAACCATCATTGCTATG 2251750 Query 182 AACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCT 233 |||||| ||||| |||| || || || | || ||||| ||||| ||||| Sbjct 2251751 AACGCTGAGCTGCTACAATTCAATTGTCTC-CTGATAACTCTTCTGACACCT 2251801 >seq7908 Length=8959126 Score = 78.8 bits (86), Expect = 2e-12 Identities = 104/142 (73%), Gaps = 8/142 (6%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||||||||||||| || |||| |||| || | || |||| |||||||||||||| Sbjct 1064273 TCATCAGTAGGGTCAAGCTAATTTGTCGCACCAAAGTTGAAACTCAGCTCACGTTCCCAC 1064214 Query 91 TTAGTGGGTGAACAATCCAACGCTT--ACCGA--ATTCTGCTTCGGTATGATAGGAAGAG 146 |||||| | |||||| || ||| | || |||||||| | ||||||||||| Sbjct 1064213 TTAGTGAGGGAACAAGCC----CTTCGATGGAGGGTTCTGCTTTGTGATGATAGGAAGGA 1064158 Query 147 CCGACATCGAAGGATCAAAAAG 168 |||| | |||||||||||| Sbjct 1064157 CCGAAGCCAGAGGATCAAAAAG 1064136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854229940224