Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24]
19,904 sequences; 2,202,483,752 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq6734 343 3e-92
seq5267 334 1e-89
seq6641 313 4e-83
seq1042 269 5e-70
seq5675 215 9e-54
seq3607 179 6e-43
seq19889 163 5e-38
seq795 140 6e-31
seq7429 109 9e-22
seq4352 107 3e-21
seq5566 98.7 2e-18
seq1958 95.1 2e-17
seq7388 86.0 1e-14
seq7908 78.8 2e-12
>seq6734
Length=98203
Score = 343 bits (380), Expect = 3e-92
Identities = 254/295 (86%), Gaps = 1/295 (0%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59
|||| ||| | ||||| |||| | || |||||||||||||||||||||||||||||
Sbjct 8168 TACTGAGCAGGATTACTATTGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 8227
Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 8228 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 8287
Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 8288 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 8347
Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 8348 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 8407
Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294
| ||| | | | |||||||| ||||| | |||||| ||| ||||||||
Sbjct 8408 TAAAACCCAAAAAGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTCA 8462
>seq5267
Length=399842
Score = 334 bits (370), Expect = 1e-89
Identities = 252/295 (85%), Gaps = 1/295 (0%)
Strand=Plus/Minus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59
|||| ||| | ||||| |||| | || |||||||||||||||||||||||||||||
Sbjct 22587 TACTGAGCAGGATTACTATTGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTC 22528
Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 22527 ACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 22468
Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179
||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct 22467 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTTGCTA 22408
Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239
|||||||||||| |||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 22407 TGAACGCTTGGCCTCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCT 22348
Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294
| ||| | | | |||||||| ||||| | |||||| ||| ||||||||
Sbjct 22347 TAAAACCCAAAAAGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTCA 22293
>seq6641
Length=1558306
Score = 313 bits (346), Expect = 4e-83
Identities = 247/295 (84%), Gaps = 1/295 (0%)
Strand=Plus/Plus
Query 1 TACTAAGCGGAATTACCATTGGGGCGACGG-TCATCAGTAGGGTAAAACTAACCTGTCTC 59
|||| ||| | ||||| |||| | || |||||||||||||||||||||||| || |
Sbjct 1147488 TACTGAGCAGGATTACTATTGCAACAACACATCATCAGTAGGGTAAAACTAACCTCTCAC 1147547
Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119
| ||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
Sbjct 1147548 ACGACGGTCTAAACCCAACTCACATTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTG 1147607
Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179
||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1147608 AATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTA 1147667
Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239
|||||||||||| ||||||||||||||||||||||| ||||||||||| |||||| ||
Sbjct 1147668 TGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGATAACTTTTCTGACACCTCCTTCC 1147727
Query 240 TCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294
| ||| | | | ||||||| ||||| ||||||| || ||||||||
Sbjct 1147728 TAAAACCCAAAAAGTCAGAAGGATCATGAGGCCCTGCTTTCATAGTCTGTATTCA 1147782
>seq1042
Length=3728125
Score = 269 bits (298), Expect = 5e-70
Identities = 176/194 (91%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 1665614 ATCAGTAGGGTAAAACTAACCTGTCTCACGATGGTCTAAACCCAGCTCACGTTCCCTATT 1665555
Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152
|||||||||||||||| |||| |||||||||||| |||||||||||||||||||
Sbjct 1665554 AGTGGGTGAACAATCCCGTGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGACA 1665495
Query 153 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 212
| |||||||||||||||||| |||||| ||||| ||||| |||||| |||||||||||||
Sbjct 1665494 TTGAAGGATCAAAAAGCAACATCGCTAAGAACGATTGGCCGCCACATGCCAGTTATCCCT 1665435
Query 213 GTGGTAACTTTTCT 226
||||||| ||||||
Sbjct 1665434 GTGGTAATTTTTCT 1665421
>seq5675
Length=4718562
Score = 215 bits (238), Expect = 9e-54
Identities = 193/242 (80%), Gaps = 0/242 (0%)
Strand=Plus/Minus
Query 53 CTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACG 112
|| ||||| ||| ||||| |||||| | |||||||||| ||||||||| ||||||
Sbjct 1609628 CTATCTCACGACAGTCTAGCCCCAGCGATCTAGCCCTATTAGTAGGTGAACAACCCAACG 1609569
Query 113 CTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAAC 172
|| |||||||||||| |||||||||||||||||||||||||||||||||||| ||
Sbjct 1609568 TTTGGTGAATTCTGCTTCATAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGAC 1609509
Query 173 GTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACC 232
|||||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||
Sbjct 1609508 ATCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCTCTGTGGTAACTTTTCTAACACC 1609449
Query 233 TCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATT 292
|| | | ||| | | | ||||||| ||||| ||||| |||| ||||||
Sbjct 1609448 TCCTTCTTAAAACCCAAAAAGTCAGAAGGATCATGAGGCCTTGCTTTCCTGGTCTGTATT 1609389
Query 293 CA 294
||
Sbjct 1609388 CA 1609387
>seq3607
Length=4643123
Score = 179 bits (198), Expect = 6e-43
Identities = 162/203 (80%), Gaps = 2/203 (1%)
Strand=Plus/Minus
Query 34 TCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT-- 91
||||||| ||||||||||||||||||| | ||||||| || |||||| | | || |
Sbjct 277159 TCAGTAGCGTAAAACTAACCTGTCTCACCATGGTCTAACCCTAGCTCATGCACTCTCTCC 277100
Query 92 TAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGAC 151
|||||||||||||||||| |||| |||||||| || |||||||||||||| |||
Sbjct 277099 TAGTGGGTGAACAATCCAGTGCTTGGTGAATTCTGTATCTCAATGATAGGAAGAGCTGAC 277040
Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211
|| ||| ||| |||||| ||| |||||| | |||| |||||||| |||||| ||
Sbjct 277039 ATTATGGGACCAAGAAGCAATGTCACTATGATCATGTGGCCACCACAAGCAAGTTATACC 276980
Query 212 TGTGGTAACTTTTCTGGCACCTC 234
|||||||||||||||| ||||||
Sbjct 276979 TGTGGTAACTTTTCTGACACCTC 276957
>seq19889
Length=1780165
Score = 163 bits (180), Expect = 5e-38
Identities = 143/177 (81%), Gaps = 1/177 (1%)
Strand=Plus/Plus
Query 119 GAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCT 178
||||||||||||| |||||| ||||||| |||||||||||||||||||| || |||||
Sbjct 1765909 GAATTCTGCTTCGTGATGATAAGAAGAGCTGACATCGAAGGATCAAAAAGTGACATCGCT 1765968
Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTA-TCCCTGTGGTAACTTTTCTGGCACCTCTAG 237
|||||| |||||| |||||||||||||| |||| ||||||||||||||| |||||| |
Sbjct 1765969 ATGAACACTTGGCCACCACAAGCCAGTTATTCCCAGTGGTAACTTTTCTGACACCTCCTG 1766028
Query 238 CCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTCA 294
| |||| | | | ||||||| ||||| |||||||| || ||||||||
Sbjct 1766029 TTTAAAATCCAAAAAGTCAGAAGGATCATGAGGCCCCACTTTCACAGTCTGTATTCA 1766085
>seq795
Length=6633642
Score = 140 bits (154), Expect = 6e-31
Identities = 98/112 (88%), Gaps = 0/112 (0%)
Strand=Plus/Minus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
||||||||||||||||||||||||||||| || |||||||| |||||||| ||||||
Sbjct 4491099 TCATCAGTAGGGTAAAACTAACCTGTCTCTCAACAGTCTAAACTCAGCTCACATTCCCTG 4491040
Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGA 142
|||||||||||||||||||| |||| |||||||||||| |||||||||
Sbjct 4491039 TTAGTGGGTGAACAATCCAAAGCTTGGTGAATTCTGCTTCACAATGATAGGA 4490988
>seq7429
Length=6366847
Score = 109 bits (120), Expect = 9e-22
Identities = 140/186 (75%), Gaps = 14/186 (8%)
Strand=Plus/Plus
Query 52 CCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGT-GGGTGAACAATCCAA 110
|||| ||||| || |||||||||||||||| |||||||||||| ||||||| ||||||
Sbjct 6100991 CCTG-CTCATAACTATCTAAACCCAGCTCACCTTCCCTATTAGTGGGGTGAATAATCCA- 6101048
Query 111 CGCTTAC---CGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAA 167
|| || || |||||||| | |||||||| | || || || | |||||||
Sbjct 6101049 --CTCACTGGTGACTTCTGCTTTGCATGGATAGGAAAAACC--TCTCAAATGGTCAAAAA 6101104
Query 168 GCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTG 227
| || || || |||| |||| ||||||||| |||| |||| | | ||||||||| ||
Sbjct 6101105 GTGACATCACTGTGAATGCTTAGCTGCCACATGCCACTTAT---TCTTGTAACTTTT-TG 6101160
Query 228 GCACCT 233
|||||
Sbjct 6101161 ACACCT 6101166
>seq4352
Length=7768020
Score = 107 bits (118), Expect = 3e-21
Identities = 147/202 (73%), Gaps = 14/202 (7%)
Strand=Plus/Minus
Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92
|||||||| |||||||||||||||| | || |||| |||| |||| | |||||| |
Sbjct 993517 ATCAGTAGAGTAAAACTAACCTGTCCCCTGGTAGTCTGAACCTAGCTTGCATTCCCTGAT 993458
Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152
||||||||| |||||||| || |||| | || | ||| |||||||| || |||
Sbjct 993457 AGTGGGTGAGTAATCCAACAGTTGTA-AATTTTACT-CACAATGTTAGGAAGAACCAACA 993400
Query 153 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 212
||||| |||||| | | || | || ||| ||||||||||||||| |
Sbjct 993399 --GAAGGCTCAAAATAC--------TGTGTATGC--GGCCAGCACAAGCCAGTTATCTCC 993352
Query 213 GTGGTAACTTTTCTGGCACCTC 234
|||||||||||| || ||||||
Sbjct 993351 GTGGTAACTTTTATGACACCTC 993330
>seq5566
Length=500826
Score = 98.7 bits (108), Expect = 2e-18
Identities = 66/74 (89%), Gaps = 0/74 (0%)
Strand=Plus/Minus
Query 160 ATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAA 219
|| ||||||| || | ||||||||||| |||| ||||||||||||||||||||||||||
Sbjct 460064 ATAAAAAAGCGACATTGCTATGAACGCGTGGCCACCACAAGCCAGTTATCCCTGTGGTAA 460005
Query 220 CTTTTCTGGCACCT 233
|||||||| |||||
Sbjct 460004 CTTTTCTGACACCT 459991
>seq1958
Length=2249324
Score = 95.1 bits (104), Expect = 2e-17
Identities = 143/201 (71%), Gaps = 3/201 (1%)
Strand=Plus/Plus
Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89
|||||| | || |||| |||| || || || ||||||||||||||| || || ||
Sbjct 1851629 GTCATCTCTGGGAGAAAATAAACCAGTA-CAGGATGGTCTAAACCCAGCTTACATTTTCT 1851687
Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149
|||| |||||||||||||| || | ||||||||| | || ||||||| || |
Sbjct 1851688 GTTAGCAGGTGAACAATCCAATAGTTGGCAAATTCTGCTGTGTGATAATAGGAACTGCTG 1851747
Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209
||| || | | ||||||||| || || | || |||| | |||||| ||| | |||||
Sbjct 1851748 ACA--GAGATACCCAAAAGCAACATCACTGTAAATGCTTTGATGCCACCAGCTACTTATC 1851805
Query 210 CCTGTGGTAACTTTTCTGGCA 230
||| | | ||| ||| ||
Sbjct 1851806 TTTGTATTGATTTTGCTGACA 1851826
>seq7388
Length=2766286
Score = 86.0 bits (94), Expect = 1e-14
Identities = 87/112 (78%), Gaps = 1/112 (1%)
Strand=Plus/Plus
Query 122 TTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATG 181
|||||| || ||||||| |||||| |||||| |||| ||||||| || | | ||||||
Sbjct 2251691 TTCTGCCTCATAATGATAGCAAGAGCTGACATCAAAGGTTCAAAAACCATCATTGCTATG 2251750
Query 182 AACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCT 233
|||||| ||||| |||| || || || | || ||||| ||||| |||||
Sbjct 2251751 AACGCTGAGCTGCTACAATTCAATTGTCTC-CTGATAACTCTTCTGACACCT 2251801
>seq7908
Length=8959126
Score = 78.8 bits (86), Expect = 2e-12
Identities = 104/142 (73%), Gaps = 8/142 (6%)
Strand=Plus/Minus
Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90
||||||||||||| || |||| |||| || | || |||| ||||||||||||||
Sbjct 1064273 TCATCAGTAGGGTCAAGCTAATTTGTCGCACCAAAGTTGAAACTCAGCTCACGTTCCCAC 1064214
Query 91 TTAGTGGGTGAACAATCCAACGCTT--ACCGA--ATTCTGCTTCGGTATGATAGGAAGAG 146
|||||| | |||||| || ||| | || |||||||| | |||||||||||
Sbjct 1064213 TTAGTGAGGGAACAAGCC----CTTCGATGGAGGGTTCTGCTTTGTGATGATAGGAAGGA 1064158
Query 147 CCGACATCGAAGGATCAAAAAG 168
|||| | ||||||||||||
Sbjct 1064157 CCGAAGCCAGAGGATCAAAAAG 1064136
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 854229940224
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |