Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24] 19,904 sequences; 2,202,483,752 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq3736 109 6e-22 seq779 105 7e-21 seq6134 102 8e-20 >seq3736 Length=3466063 Score = 109 bits (120), Expect = 6e-22 Identities = 131/174 (75%), Gaps = 3/174 (2%) Strand=Plus/Minus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC-CTTTGCTCGAATACATTACCATGG 71 ||||||||||||||||||||| ||||||||||||| |||| |||||| | | || Sbjct 1740874 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCTGGTTGCCAGAATACTCCAACTAGG 1740815 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATA 131 |||||| ||||||||| | ||||||||||||| ||||| | ||| | | | ||||| Sbjct 1740814 AATAATGGAATAGGAC-TCTGGTTCTATTTTGTTGGTTT-TTGGAACTCGGGCCATGATT 1740757 Query 132 AATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 || | |||| | ||||| | ||||| | | |||||||||||||||| Sbjct 1740756 AAGAGGGATGGCTGGGGGCATTCGTATTGTGCCGCTACAGGTGAAATTCTTGGA 1740703 >seq779 Length=3640918 Score = 105 bits (116), Expect = 7e-21 Identities = 130/174 (75%), Gaps = 3/174 (2%) Strand=Plus/Plus Query 13 TTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC-CTTTGCTCGAATACATTACCATGG 71 ||||||||||||||||||||| ||||||||||||| | || |||||| | | || Sbjct 3615625 TTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCTGGTCGCCGGAATACTCCAGCTAGG 3615684 Query 72 AATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGATA 131 |||||| ||||||||| | |||||||||||||| ||||| | ||| | | ||||| Sbjct 3615685 AATAATGGAATAGGAC-TCCGGTTCTATTTTGTTGGTTT-TCGGAACTGGGGCCATGATT 3615742 Query 132 AATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 || | ||| | |||||| | ||||| | | |||||||||||||||| Sbjct 3615743 AAGAGGGACGGCCGGGGGCATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGA 3615796 >seq6134 Length=3911284 Score = 102 bits (112), Expect = 8e-20 Identities = 131/176 (74%), Gaps = 11/176 (6%) Strand=Plus/Plus Query 14 TTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC-CTTTGCTCGAATACATTACCATGGA 72 |||||||||||||||||||| ||||||||||||| | || |||||| | | ||| Sbjct 2389394 TTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCTGGTCACTGGAATACTCCAGCTAGGA 2389453 Query 73 ATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTA---GGACCGCCCGTAATGA 129 ||||| ||||||||| | || ||||||||||| ||||| | ||| ||| |||| Sbjct 2389454 ATAATGGAATAGGAC-TCCGATTCTATTTTGTTGGTTTTGAACTGGA--GCC----ATGA 2389506 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGA 185 | || | ||| || |||||| | ||||| || | |||||||||||||||| Sbjct 2389507 TTAAGAGGGACAGCCGGGGGCATTTGTATTGTGCTGCTAGAGGTGAAATTCTTGGA 2389562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511901276160