Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24] 19,904 sequences; 2,202,483,752 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq7601 188 1e-45 seq3736 143 5e-32 seq6134 138 2e-30 seq2047 105 1e-20 >seq7601 Length=1688416 Score = 188 bits (208), Expect = 1e-45 Identities = 199/258 (77%), Gaps = 3/258 (1%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 ||| |||||||||| | ||| | |||| || | ||||| |||||||||||||||| Sbjct 1087110 CTTTTTAGAGGGACAAGTGGCGTTCAGCCACCCGA-GATTGAG-CAATAACAGGTCTGTG 1087167 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||||| | |||| ||||||||||||||||||| | || || || | Sbjct 1087168 ATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTGTGTCTAC 1087227 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||| |||| |||| |||||| | | || | | ||||| ||||||| | | |||| Sbjct 1087228 CCTACGCCGACAGGTGCGGGTAACCCGTTGAACCCCATTCGTGATGGGGATCGGGGATTG 1087287 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 |||||||| | | | |||||||||| || |||||| ||| ||||| ||| |||||||||| Sbjct 1087288 CAATTATTCCCCATGAACGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTCGCGTTGATT 1087347 Query 311 ACGTCCCTGCCCTTTGTA 328 | | |||||||||||||| Sbjct 1087348 AAGCCCCTGCCCTTTGTA 1087365 >seq3736 Length=3466063 Score = 143 bits (158), Expect = 5e-32 Identities = 191/259 (74%), Gaps = 5/259 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || || ||| ||||||||||||||| Sbjct 1740248 CTTCTTAGAGGGACAAGTGGCGTTCAGCCACCTGATATT-GAG-CAATAACAGGTCTGTA 1740191 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 || |||||| |||| |||| ||||| ||||||||||||| | | | || | Sbjct 1740190 ATACCCTTAAATGTCTGGGGCTGCACGTGCGCTACACTGACTGGCTTAGCATGTGTCTAC 1740131 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGT-CGTGCTGGGGATAGAGCATT 249 ||| |||| || | ||||| || ||| ||| | || |||| ||||||| | ||| Sbjct 1740130 CCTATGCCGACAGCTGCAGGTAACCT-GTTGAACCCCGTTCGTGATGGGGATTAGGGATT 1740072 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 ||||||||| | | | || ||||||| || |||||| ||| ||||| ||| | ||||||| Sbjct 1740071 GCAATTATTCCCCATGAATGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTCACGTTGAT 1740012 Query 310 TACGTCCCTGCCCTTTGTA 328 || ||||||||| |||||| Sbjct 1740011 TAAGTCCCTGCCTTTTGTA 1739993 >seq6134 Length=3911284 Score = 138 bits (152), Expect = 2e-30 Identities = 188/256 (73%), Gaps = 5/256 (2%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| || || ||||| |||||||||||||||| Sbjct 2390026 CTTCTTAGAGGGACAAGTGGCATTCAGCC-ATCTGAGATTGAG-CAATAACAGGTCTGTG 2390083 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 |||||||||||| | |||| ||| ||||||||||||||| | || | || | Sbjct 2390084 ATGCCCTTAGATATCTGGGGCTGCATGCGCGCTACACTGACTGGCTCAGTGTGTGTCTAC 2390143 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGA-TAGAGCATT 249 ||| ||| | | |||||| | | || | | | || |||||| ||| | ||| Sbjct 2390144 CCTATGCCAACAACTGCGGGTAACCCGTTGAACCCCATTTGTAATGGGGACTAG-GGATT 2390202 Query 250 GCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGAT 309 ||||||||| | | | || ||||||| || |||||| | | ||||| |||| | |||||| Sbjct 2390203 GCAATTATTCCCCATGAATGAGGAATTCCCAGTAAGTGTGGGTCATAAGCATGTGTTGAT 2390262 Query 310 TACGTCCCTGCCCTTT 325 || ||||||||||||| Sbjct 2390263 TAAGTCCCTGCCCTTT 2390278 >seq2047 Length=1246781 Score = 105 bits (116), Expect = 1e-20 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 208 GGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAA 267 |||||||| | || | | | ||| ||||||| | | |||||||||||| || | || Sbjct 851861 GGGTAATCAGTTGAACCCCATTTGTGATGGGGATCGGGGATTGCAATTATTCCTGATGAA 851920 Query 268 CGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGT 327 |||||||| || |||||| ||| ||||| ||| ||| ||||||| ||||||||||||||| Sbjct 851921 CGAGGAATTCCCAGTAAGTGCGGGTCATAAGCTCGCATTGATTAAGTCCCTGCCCTTTGT 851980 Query 328 A 328 | Sbjct 851981 A 851981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947011469312