Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24]
19,904 sequences; 2,202,483,752 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq5267 104 4e-20
seq6734 100 5e-19
seq6641 96.9 6e-18
seq19887 87.8 3e-15
seq1042 77.0 5e-12
seq795 77.0 5e-12
>seq5267
Length=399842
Score = 104 bits (114), Expect = 4e-20
Identities = 93/114 (82%), Gaps = 2/114 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| | |||||| | ||||| | || | || |||| || || |
Sbjct 22585 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 22642
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114
| |||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 22643 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 22696
>seq6734
Length=98203
Score = 100 bits (110), Expect = 5e-19
Identities = 92/114 (81%), Gaps = 2/114 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| | |||||| | ||||| | || | || |||| || || |
Sbjct 8170 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 8113
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114
| |||||||||||||||| |||||||| |||||||||||||||||| |||||
Sbjct 8112 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAAAATCC 8059
>seq6641
Length=1558306
Score = 96.9 bits (106), Expect = 6e-18
Identities = 91/114 (80%), Gaps = 3/114 (3%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| | |||||| | ||||| | || | || |||| || || |
Sbjct 1147490 GTACGAGAGGAACCGCAGG-TTCAGACT--TTGGTGTATGTGCTTGGCTGAGGAGCCAAT 1147434
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114
| | |||||||||||||| |||||||| ||||| ||||||||||||||||||
Sbjct 1147433 GGGGTGAAGCTACCATCTGTGGGATTATGACTGAATGCCTCTAAGTCAGAATCC 1147380
>seq19887
Length=6038298
Score = 87.8 bits (96), Expect = 3e-15
Identities = 88/112 (79%), Gaps = 2/112 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||| | | |||||| || ||||| | || | || ||| || | |
Sbjct 2239885 GTACGAGAGGAACCACAGG-TTCAGA-TATTTGGTGTATGTGCTTGGTTGAGGAGCAAAT 2239828
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAAT 112
| |||||||||||||||| |||||||| |||||||||||||| |||||||
Sbjct 2239827 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAATCAGAAT 2239776
>seq1042
Length=3728125
Score = 77.0 bits (84), Expect = 5e-12
Identities = 87/114 (76%), Gaps = 2/114 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||| |||||||||||| | |||| | | |||| | || | || | || || || |
Sbjct 1665646 GTAGGAGAGGAACCGCAGG-TTCACAC-ATCTGGTGTATGTGATTGGCCGAAGAGCCAAT 1665703
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114
| ||||||||||||| || |||||||| ||||| ||||||||||||||||||
Sbjct 1665704 GGGGCGAAGCTACCATTTGTGGGATTATGACTGAATGCCTCTAAGTCAGAATCC 1665757
>seq795
Length=6633642
Score = 77.0 bits (84), Expect = 5e-12
Identities = 87/114 (76%), Gaps = 2/114 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||| |||||||||||| | |||||| | ||||| || | || | || || || |
Sbjct 4491131 GTATGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGCATGTGCTTGGCCGAGGAGCCAAT 4491188
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114
| |||||||||||||| |||||||| ||||| ||||||||||||||||||
Sbjct 4491189 GGGCTGAAGCTACCATCTGTGGGATTATGACTGAATGCCTCTAAGTCAGAATCC 4491242
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 819042041856
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |