Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24] 19,904 sequences; 2,202,483,752 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq5267 104 4e-20 seq6734 100 5e-19 seq6641 96.9 6e-18 seq19887 87.8 3e-15 seq1042 77.0 5e-12 seq795 77.0 5e-12 >seq5267 Length=399842 Score = 104 bits (114), Expect = 4e-20 Identities = 93/114 (82%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 22585 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 22642 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 22643 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 22696 >seq6734 Length=98203 Score = 100 bits (110), Expect = 5e-19 Identities = 92/114 (81%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 8170 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGTATGTGCTTGGCTGAGGAGCCAAT 8113 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||||||| ||||| Sbjct 8112 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAAAATCC 8059 >seq6641 Length=1558306 Score = 96.9 bits (106), Expect = 6e-18 Identities = 91/114 (80%), Gaps = 3/114 (3%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | || |||| || || | Sbjct 1147490 GTACGAGAGGAACCGCAGG-TTCAGACT--TTGGTGTATGTGCTTGGCTGAGGAGCCAAT 1147434 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | | |||||||||||||| |||||||| ||||| |||||||||||||||||| Sbjct 1147433 GGGGTGAAGCTACCATCTGTGGGATTATGACTGAATGCCTCTAAGTCAGAATCC 1147380 >seq19887 Length=6038298 Score = 87.8 bits (96), Expect = 3e-15 Identities = 88/112 (79%), Gaps = 2/112 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||| | | |||||| || ||||| | || | || ||| || | | Sbjct 2239885 GTACGAGAGGAACCACAGG-TTCAGA-TATTTGGTGTATGTGCTTGGTTGAGGAGCAAAT 2239828 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAAT 112 | |||||||||||||||| |||||||| |||||||||||||| ||||||| Sbjct 2239827 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAATCAGAAT 2239776 >seq1042 Length=3728125 Score = 77.0 bits (84), Expect = 5e-12 Identities = 87/114 (76%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| |||||||||||| | |||| | | |||| | || | || | || || || | Sbjct 1665646 GTAGGAGAGGAACCGCAGG-TTCACAC-ATCTGGTGTATGTGATTGGCCGAAGAGCCAAT 1665703 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | ||||||||||||| || |||||||| ||||| |||||||||||||||||| Sbjct 1665704 GGGGCGAAGCTACCATTTGTGGGATTATGACTGAATGCCTCTAAGTCAGAATCC 1665757 >seq795 Length=6633642 Score = 77.0 bits (84), Expect = 5e-12 Identities = 87/114 (76%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||| |||||||||||| | |||||| | ||||| || | || | || || || | Sbjct 4491131 GTATGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTGCATGTGCTTGGCCGAGGAGCCAAT 4491188 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||| |||||||| ||||| |||||||||||||||||| Sbjct 4491189 GGGCTGAAGCTACCATCTGTGGGATTATGACTGAATGCCTCTAAGTCAGAATCC 4491242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 819042041856