Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24] 19,904 sequences; 2,202,483,752 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq19881 316 6e-84 seq2897 205 3e-50 seq3896 188 2e-45 seq2384 172 2e-40 seq878 168 2e-39 seq7908 165 2e-38 seq443 161 3e-37 seq3736 159 1e-36 seq3900 140 1e-30 seq3754 131 5e-28 seq7735 87.8 5e-15 seq4492 80.6 8e-13 seq2734 80.6 8e-13 seq7806 75.2 3e-11 >seq19881 Length=10700766 Score = 316 bits (350), Expect = 6e-84 Identities = 388/516 (75%), Gaps = 18/516 (3%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 |||||||||||| ||||| | | | |||||| ||||||| | ||| | |||| |||| Sbjct 9797651 GTACTCATTCCAGTTACAGGGTCTCGAAAGAGTCCTGTAT---TGTTTTTCGTCATTACC 9797707 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 | ||| ||||||| ||||||||||||||||||||| || |||||||| |||||||| | Sbjct 9797708 TACCCAGGTCGGGAGTGGGTAATTTGCGCGCCTGCTAACTGCCTTGGATTTGGTAGCCAT 9797767 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 ||| || |||||||| |||||| | ||||| |||| || | |||||| | |||| ||| Sbjct 9797768 TTCCTAGACTCCCTCTTCGGAATTGGACCCTGATTCTCCATCACCCGTGGTCACCACGGT 9797827 Query 180 AGGC-CACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGG 238 ||| || | |||||| |||||||||||||||||| ||||||||| | | || | Sbjct 9797828 GGGCACAGGA-AGTACCATAGAAAGTTGATAGGGCAGACATTTGAATGCATTGTTGCTGC 9797886 Query 239 CTCAAGGCCATGCGATTCG-TTAAGTTATTAT-GAATCACCAAGGAGCCCCGAAGGGCGT 296 | || || | |||| | ||| || | | || ||||||| | | || | | || Sbjct 9797887 CATGGGGGCAAGTGATTGGCCCAAGGTAATCTAGAGTCACCAAAGCGTCCGGGTGAGCCC 9797946 Query 297 TGGT---TTTTTATCTAATAAATACACCCCTTCC--GAAGTC-GGGGTTTTTAGCATGTA 350 |||| |||| | | |||||| ||| | | || || ||| | | || || ||||| | Sbjct 9797947 TGGTTGGTTTTGGTTTGATAAATGCACGCATCCCTGGAGGTCAGCGCTTGTTGGCATGCA 9798006 Query 351 TTAGCTCTAGAATTACCACGGTTATCCATGTA--GTAAGGTACTATCAAATAAACGATAA 408 || |||||||||||||||| | | |||| ||| | || | |||||| ||| |||| Sbjct 9798007 TTGGCTCTAGAATTACCACAGGTGTCCAAGTAAGGCTTGGGATGATCAAAGGAACCATAA 9798066 Query 409 CTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATG 468 |||||||||||| |||||| ||||||||||||| | | ||||||||||| |||| Sbjct 9798067 CTGATTTAATGAACCATTCACAGTTTCACTGTAACGCCCATGTGTACTTAGACATTCATG 9798126 Query 469 GCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||| || |||||||||| Sbjct 9798127 GCTTAATCTTTGAGACAAGCAT-TG-CTACTGGCAG 9798160 >seq2897 Length=11696529 Score = 205 bits (226), Expect = 3e-50 Identities = 182/223 (82%), Gaps = 5/223 (2%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACAAGACCCA-AAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 |||||| ||||||||||| | || |||||| ||||||| ||||| ||||||||||| Sbjct 9727007 GTACTCTTTCCAATTACAGGGCCTTGAAAGAGTCCTGTATTGATATTTTTTGTCACTACC 9726948 Query 60 TCCCCGTGTC-GGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCG 118 ||||| || |||| ||||||||||| | ||||||||||||||||||||||||||||| Sbjct 9726947 TCCCCAGGTTTGGGAGTGGGTAATTTGTGTGCCTGCTGCCTTCCTTGGATGTGGTAGCCA 9726888 Query 119 TTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGG 178 ||||||||||| ||| ||||||||| |||||| |||| || | ||| || | ||||||| Sbjct 9726887 TTTCTCAGGCTTCCTTTCCGGAATCAAACCCTGATTCTCCATCACCTGTGGTCACCATGG 9726828 Query 179 TAGGC-CACTATCCTACCATCGAAAGTTGATAGGGCAGAAATT 220 || || | || |||| |||| ||||||| ||||||| ||| Sbjct 9726827 TAAGCGTAGGAT--TACCGTCGAGAGTTGATGGGGCAGATATT 9726787 Score = 147 bits (162), Expect = 7e-33 Identities = 131/159 (82%), Gaps = 10/159 (6%) Strand=Plus/Minus Query 341 TTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGT----ACT-ATC 395 || ||||| |||||||||||||||||||| |||||||| ||||||| | | ||| Sbjct 4084695 TTGGCATGAATTAGCTCTAGAATTACCACAGTTATCCA---AGTAAGGCTTGGAGTGATC 4084639 Query 396 AAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCT-TATA 454 ||| ||| |||||||||||||||||||||| ||||||||||||| || | | | | Sbjct 4084638 AAAGGAACCATAACTGATTTAATGAGCCATTTGCAGTTTCACTGT-TATGTCCATGTGCA 4084580 Query 455 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATG 493 |||||||||||| |||||||||||||||||||||| ||| Sbjct 4084579 CTTAGACATGCAAGGCTTAATCTTTGAGACAAGCAAATG 4084541 >seq3896 Length=3046714 Score = 188 bits (208), Expect = 2e-45 Identities = 305/426 (72%), Gaps = 17/426 (4%) Strand=Plus/Minus Query 89 GCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACC 148 |||||| ||||||||||||| | ||||| ||||||||||| ||| ||| ||| ||||| Sbjct 2501497 GCCTGCCTCCTTCCTTGGATGCGTTAGCCATTTCTCAGGCTTCCTTTCCAGAACTGAACC 2501438 Query 149 CTAATTCCCCGTTACCCGTTGATACCATGGTAGGC-CACTATCCTACCATCGAAAGTTGA 207 || ||| || | | || | | || ||||| ||| || | ||| | | || ||| Sbjct 2501437 CTGATTTCCTATCATCCATGGTCACAATGGTCGGCACAGGAAG-TACTGTTAAGAGCTGA 2501379 Query 208 TAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATT--CGTTAAGTTA 265 || | |||| ||| ||| || | | | | | || ||||| || | | | |||| Sbjct 2501378 TATGACAGATATTGAAATTAATTGTTGTCACCATAGGGGCATGCAGTTGACCTGAGGTTA 2501319 Query 266 TTATGAATCACCAAGGAGCCCCGAAGG---GCGTTGGTTTTTTATCTAATAAATACACCC 322 | || ||||||||| || | | | ||||||||| | | |||||| | | Sbjct 2501318 TCTAGAGTCACCAAGG-GCTGGGTAAATTTGGGTTGGTTTTGGTT-TGATAAATGCTATC 2501261 Query 323 CTTCCGAAGTC--GGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATG 380 | ||| || | | | | || |||||||||||||||||||| ||||| |||||||| Sbjct 2501260 C--CCGGAGGCCAGAGCTCATTGGCATGTATTAGCTCTAGAATGACCACAGTTATCCAAA 2501203 Query 381 TA--GTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACT 438 || | || | | |||| ||| |||||||||||||||||||||| ||||||| ||| Sbjct 2501202 TAAGGCTTGGAGCAACCAAAGGAACCATAACTGATTTAATGAGCCATTTGCAGTTTTACT 2501143 Query 439 GTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTAC 498 ||| | | | | |||||||||| |||||||||||||||||||||||||||||| || | Sbjct 2501142 GTACTGCTCGGTG-TACTTAGACACGCATGGCTTAATCTTTGAGACAAGCATATG-CTGC 2501085 Query 499 TGGCAG 504 |||||| Sbjct 2501084 TGGCAG 2501079 >seq2384 Length=1614766 Score = 172 bits (190), Expect = 2e-40 Identities = 138/163 (85%), Gaps = 5/163 (3%) Strand=Plus/Plus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTA--GTAAGGTACTATCAAATAA 401 ||||||| |||||||||||||||||| |||||||| ||| | || | |||||| | Sbjct 1118452 GCATGTACTAGCTCTAGAATTACCACAGTTATCCAAGTAAGGCTTGGAGCGATCAAAGGA 1118511 Query 402 ACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGAC 461 ||||||||||||||||||||||||||||||||||||| | | | ||||||||| Sbjct 1118512 C--ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTAACGCCCGTGTGTACTTAGAC 1118569 Query 462 ATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||||| |||||||||| Sbjct 1118570 ATGCATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 1118611 >seq878 Length=2697090 Score = 168 bits (186), Expect = 2e-39 Identities = 173/219 (79%), Gaps = 8/219 (4%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACA-AGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 ||||||||| |||||||| || | |||||||| ||||||| ||||| | ||||| | Sbjct 2326104 GTACTCATTTCAATTACAGAGCCTCAAAAGAGACCTGTAT---TATTTTTCATCACTGCT 2326160 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 ||| | || |||| |||||||||||| ||||| |||||||||||||||||||||| | Sbjct 2326161 GCCCTGGGTTGGGAGTGGGTAATTTGCATGCCTGTTGCCTTCCTTGGATGTGGTAGCTTT 2326220 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGAT-ACCATGG 178 || |||||||||||||| |||||| |||||| |||| | ||| || |||| ||| || Sbjct 2326221 TTTTCAGGCTCCCTCTCTGGAATCAAACCCTGATTCTCAGTTGTCC-ATGATCACCCTGA 2326279 Query 179 TAGG-CCACTATCCTACCATCGAAAGTTGATAGGGCAGA 216 |||| || | || || |||||||||||||||||| Sbjct 2326280 TAGGAACAGGA-AATATCACTGAAAGTTGATAGGGCAGA 2326317 >seq7908 Length=8959126 Score = 165 bits (182), Expect = 2e-38 Identities = 176/227 (78%), Gaps = 4/227 (2%) Strand=Plus/Plus Query 2 TACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||| ||| | | || | |||| |||||||| ||||| ||||||| | Sbjct 1736693 TACTCATTCCAGTTATAGGGCCTCGTAAGAACCCTGTATTGTTATTTTCCCTCACTACTT 1736752 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||| | || ||| ||| |||||||| ||||| |||||||||||||| ||||||| ||| Sbjct 1736753 CCCTGGATCAGGAGTGGATAATTTGCATGCCTGTTGCCTTCCTTGGATATGGTAGCTGTT 1736812 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||| |||||||||| |||||| ||||| ||||||| | |||| | | | |||||||| Sbjct 1736813 TCTCA-GCTCCCTCTCTGGAATCCAACCCAGATTCCCCATCACCCATGGTTGCCATGGTA 1736871 Query 181 GGC-CACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATG 226 ||| || | | ||||||| || |||||| |||| | ||| |||| Sbjct 1736872 GGCACAGGAAGC-ACCATCGGAAATTGATAAGGCAAACATTCAAATG 1736917 >seq443 Length=323957 Score = 161 bits (178), Expect = 3e-37 Identities = 236/319 (74%), Gaps = 20/319 (6%) Strand=Plus/Plus Query 201 AAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC-TCAAGGCCATGCGATTCGTT 259 |||||||||||||||| ||| ||||| | | | || | | ||| ||||||| | Sbjct 90390 AAGTTGATAGGGCAGACATTCGAATGCATCGTTGCTGCTATGGAGGTG-TGCGATTGGCC 90448 Query 260 --AAGTTATTATGAATCACCAAGG-AGCCCCGAAGGGC---GTTGGTTTTTTATCTAATA 313 || |||| || ||||||| | ||| | | | | ||||||||| ||| ||| Sbjct 90449 CGAAATTATCTAGAGTCACCAAAGCAGCTGGGCAAGCCCGGGTTGGTTTTGG-TCTGATA 90507 Query 314 AATACACCCCTTCC--GAAGTCGGGGTTTTT-AGCATGTATTAGCTCTAGAATTACCACG 370 ||| ||| | || || ||| | | | ||||||||||||||||||||||||||| Sbjct 90508 AATGCACATATCCCCGGAGGTCAGCACTCGTCAGCATGTATTAGCTCTAGAATTACCACA 90567 Query 371 GTTATCCATGTA--GTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCG 428 |||||||| ||| | || | ||| || ||| ||||| ||||||||||||||| | Sbjct 90568 GTTATCCAAGTAAGGCTTGGAGCGATCCAAGGAACCCTAACTAATTTAATGAGCCATTTG 90627 Query 429 CAGTTTCACTGTATAG--ATTGCTTATACTTAGA-CATGCATGGCTTAATCTTTGAGACA 485 ||||||||||||| | ||| | |||||||| ||||||||||||||||||||||||| Sbjct 90628 CAGTTTCACTGTAACGCCCTTG--TTTACTTAGACCATGCATGGCTTAATCTTTGAGACA 90685 Query 486 AGCATATGACTACTGGCAG 504 |||||||| |||| ||||| Sbjct 90686 AGCATATG-CTACAGGCAG 90703 >seq3736 Length=3466063 Score = 159 bits (176), Expect = 1e-36 Identities = 124/145 (86%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTG-TCACTAC 58 |||||||||||||||||| | || ||||| || ||||||| ||||| || |||||| Sbjct 1741104 GTACTCATTCCAATTACAGGGCCTCAAAAAAGTCCTGTATTGTTATTTTTTCATCACTAT 1741163 Query 59 CTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCG 118 |||||| || |||| ||||||||||| | ||||||||||||||||||||||| ||||| Sbjct 1741164 CTCCCCAGGTTGGGAGTGGGTAATTTGTGAGCCTGCTGCCTTCCTTGGATGTGATAGCCA 1741223 Query 119 TTTCTCAGGCTCCCTCTCCGGAATC 143 |||||| |||||||||||||||||| Sbjct 1741224 TTTCTCGGGCTCCCTCTCCGGAATC 1741248 >seq3900 Length=2217464 Score = 140 bits (154), Expect = 1e-30 Identities = 161/214 (75%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 4 CTCATTCCAATTACAAG-ACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCC 62 ||||||||| ||||||| | | ||| ||||||| ||||| | ||||||||||| Sbjct 846823 CTCATTCCAGTTACAAGGAGTTGACAGAATCCTGTATTGTTATTTTTCATCACTACCTCC 846882 Query 63 CCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTC 122 || ||| || ||| ||||| || |||| |||||||||||||||| ||||| ||||| Sbjct 846883 CCAGGTCAGGGGTGGAAAATTTT-GCACCTGGTGCCTTCCTTGGATGTAGTAGCTGTTTC 846941 Query 123 TCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGG 182 ||||||||||||| | | || |||| | || |||| |||| | | ||||| |||| Sbjct 846942 TCAGGCTCCCTCTTTGTTACTGAGCCCTGAGTCACCGTCACCCATGGTCACCATAATAGG 847001 Query 183 CCACTATCCTACCATCGAAAGTTGATAGGGCAGA 216 ||| |||||| ||||||||| |||||||| Sbjct 847002 CCAAGGAAGTACCATTGAAAGTTGAGAGGGCAGA 847035 >seq3754 Length=10286911 Score = 131 bits (144), Expect = 5e-28 Identities = 142/183 (78%), Gaps = 4/183 (2%) Strand=Plus/Minus Query 35 TGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGC 94 ||||| |||| |||||||||||||||| ||| |||| |||||||||||| | ||||| Sbjct 8420095 TGTATTGTTATTCTTTGTCACTACCTCCCCATGTTGGGAGTGGGTAATTTGCACACCTGC 8420036 Query 95 TGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATT 154 ||||||||||||||| |||| |||||| |||| |||||| ||| | |||||| | | Sbjct 8420035 CACCTTCCTTGGATGTGCTAGCTGTTTCTACGGCTTCCTCTCTGGATTAAAACCCTGAAT 8419976 Query 155 CCCCGTTACCCGTTGAT-ACCATGGTA-GGCCAC-TATCCTACCATCGAAAGTTGATAGG 211 | ||| ||| | |||| ||||||| | |||||| | || ||||||||||||| Sbjct 8419975 CTCCGACACCTG-TGATCACCATGGAAGGGCCACAGGAAGAATGATTGAAAGTTGATAGG 8419917 Query 212 GCA 214 ||| Sbjct 8419916 GCA 8419914 >seq7735 Length=5406674 Score = 87.8 bits (96), Expect = 5e-15 Identities = 69/82 (84%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 347 TGTATTAGCTCTAGAATTACCACGGTTATCCATGTA--GTAAGGTACTATCAAATAAACG 404 ||||||||||||||||||||||| |||||||| ||| | || | |||||| ||| Sbjct 2113443 TGTATTAGCTCTAGAATTACCACTGTTATCCAAGTAAGGCTTGGAGCAATCAAAGGAACC 2113384 Query 405 ATAACTGATTTAATGAGCCATT 426 |||||||||||||||||||||| Sbjct 2113383 ATAACTGATTTAATGAGCCATT 2113362 >seq4492 Length=5486485 Score = 80.6 bits (88), Expect = 8e-13 Identities = 81/108 (75%), Gaps = 12/108 (11%) Strand=Plus/Plus Query 76 GGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCT 135 |||||||| || |||||||||||||||||||| |||||||||||| ||| Sbjct 5429140 GGGTAATTGGCACGCCTGCTGCCTTCCTTGGACGTGGTAGCCGTT------------TCT 5429187 Query 136 CCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGC 183 || |||||||||| |||| || | |||| | | ||| |||||||| Sbjct 5429188 CCAGAATCGAACCTGGATTCACCATCACCCATGGTCACCGTGGTAGGC 5429235 >seq2734 Length=5575459 Score = 80.6 bits (88), Expect = 8e-13 Identities = 70/86 (81%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 1 GTACTCATTCCAATTACA-AGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 |||||||||||||||||| || | | |||||| ||||||| ||||| | |||||||| Sbjct 3520313 GTACTCATTCCAATTACAGAGTCTCGAAAGAGTCCTGTATTGTTATTTTTCATCACTACC 3520254 Query 60 TCCCCGTGTCGGGATTGGGTAATTTG 85 |||||| | ||| ||||||||||| Sbjct 3520253 TCCCCGAATTAGGAGTGGGTAATTTG 3520228 >seq7806 Length=408021 Score = 75.2 bits (82), Expect = 3e-11 Identities = 74/96 (77%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 90 CCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCC 149 ||||||| || |||||||| ||||| |||||||||||| ||||| | |||||| Sbjct 94423 CCTGCTGTTGTCTTTGGATGTTGTAGCATTTTCTCAGGCTCTCTCTCTGATGGAGAACCC 94482 Query 150 TAATTCCCCGTTACCCGTTGATACCATGGTAGGCCA 185 | ||||||| |||||| | |||||||||| ||| Sbjct 94483 TGATTCCCCATTACCCACGGTCACCATGGTAGACCA 94518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510099369984