Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pelodiscus_20sinensis_20[refseq_20GCF_5F000230535.1_202012-07-24]
19,904 sequences; 2,202,483,752 total letters
Query= AAMG01002244.1
Length=504
Score E
Sequences producing significant alignments: (Bits) Value
seq19881 316 6e-84
seq2897 205 3e-50
seq3896 188 2e-45
seq2384 172 2e-40
seq878 168 2e-39
seq7908 165 2e-38
seq443 161 3e-37
seq3736 159 1e-36
seq3900 140 1e-30
seq3754 131 5e-28
seq7735 87.8 5e-15
seq4492 80.6 8e-13
seq2734 80.6 8e-13
seq7806 75.2 3e-11
>seq19881
Length=10700766
Score = 316 bits (350), Expect = 6e-84
Identities = 388/516 (75%), Gaps = 18/516 (3%)
Strand=Plus/Plus
Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59
|||||||||||| ||||| | | | |||||| ||||||| | ||| | |||| ||||
Sbjct 9797651 GTACTCATTCCAGTTACAGGGTCTCGAAAGAGTCCTGTAT---TGTTTTTCGTCATTACC 9797707
Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119
| ||| ||||||| ||||||||||||||||||||| || |||||||| |||||||| |
Sbjct 9797708 TACCCAGGTCGGGAGTGGGTAATTTGCGCGCCTGCTAACTGCCTTGGATTTGGTAGCCAT 9797767
Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179
||| || |||||||| |||||| | ||||| |||| || | |||||| | |||| |||
Sbjct 9797768 TTCCTAGACTCCCTCTTCGGAATTGGACCCTGATTCTCCATCACCCGTGGTCACCACGGT 9797827
Query 180 AGGC-CACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGG 238
||| || | |||||| |||||||||||||||||| ||||||||| | | || |
Sbjct 9797828 GGGCACAGGA-AGTACCATAGAAAGTTGATAGGGCAGACATTTGAATGCATTGTTGCTGC 9797886
Query 239 CTCAAGGCCATGCGATTCG-TTAAGTTATTAT-GAATCACCAAGGAGCCCCGAAGGGCGT 296
| || || | |||| | ||| || | | || ||||||| | | || | | ||
Sbjct 9797887 CATGGGGGCAAGTGATTGGCCCAAGGTAATCTAGAGTCACCAAAGCGTCCGGGTGAGCCC 9797946
Query 297 TGGT---TTTTTATCTAATAAATACACCCCTTCC--GAAGTC-GGGGTTTTTAGCATGTA 350
|||| |||| | | |||||| ||| | | || || ||| | | || || ||||| |
Sbjct 9797947 TGGTTGGTTTTGGTTTGATAAATGCACGCATCCCTGGAGGTCAGCGCTTGTTGGCATGCA 9798006
Query 351 TTAGCTCTAGAATTACCACGGTTATCCATGTA--GTAAGGTACTATCAAATAAACGATAA 408
|| |||||||||||||||| | | |||| ||| | || | |||||| ||| ||||
Sbjct 9798007 TTGGCTCTAGAATTACCACAGGTGTCCAAGTAAGGCTTGGGATGATCAAAGGAACCATAA 9798066
Query 409 CTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCATG 468
|||||||||||| |||||| ||||||||||||| | | ||||||||||| ||||
Sbjct 9798067 CTGATTTAATGAACCATTCACAGTTTCACTGTAACGCCCATGTGTACTTAGACATTCATG 9798126
Query 469 GCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
|||||||||||||||||||||| || ||||||||||
Sbjct 9798127 GCTTAATCTTTGAGACAAGCAT-TG-CTACTGGCAG 9798160
>seq2897
Length=11696529
Score = 205 bits (226), Expect = 3e-50
Identities = 182/223 (82%), Gaps = 5/223 (2%)
Strand=Plus/Minus
Query 1 GTACTCATTCCAATTACAAGACCCA-AAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59
|||||| ||||||||||| | || |||||| ||||||| ||||| |||||||||||
Sbjct 9727007 GTACTCTTTCCAATTACAGGGCCTTGAAAGAGTCCTGTATTGATATTTTTTGTCACTACC 9726948
Query 60 TCCCCGTGTC-GGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCG 118
||||| || |||| ||||||||||| | |||||||||||||||||||||||||||||
Sbjct 9726947 TCCCCAGGTTTGGGAGTGGGTAATTTGTGTGCCTGCTGCCTTCCTTGGATGTGGTAGCCA 9726888
Query 119 TTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGG 178
||||||||||| ||| ||||||||| |||||| |||| || | ||| || | |||||||
Sbjct 9726887 TTTCTCAGGCTTCCTTTCCGGAATCAAACCCTGATTCTCCATCACCTGTGGTCACCATGG 9726828
Query 179 TAGGC-CACTATCCTACCATCGAAAGTTGATAGGGCAGAAATT 220
|| || | || |||| |||| ||||||| ||||||| |||
Sbjct 9726827 TAAGCGTAGGAT--TACCGTCGAGAGTTGATGGGGCAGATATT 9726787
Score = 147 bits (162), Expect = 7e-33
Identities = 131/159 (82%), Gaps = 10/159 (6%)
Strand=Plus/Minus
Query 341 TTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGT----ACT-ATC 395
|| ||||| |||||||||||||||||||| |||||||| ||||||| | | |||
Sbjct 4084695 TTGGCATGAATTAGCTCTAGAATTACCACAGTTATCCA---AGTAAGGCTTGGAGTGATC 4084639
Query 396 AAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCT-TATA 454
||| ||| |||||||||||||||||||||| ||||||||||||| || | | | |
Sbjct 4084638 AAAGGAACCATAACTGATTTAATGAGCCATTTGCAGTTTCACTGT-TATGTCCATGTGCA 4084580
Query 455 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATG 493
|||||||||||| |||||||||||||||||||||| |||
Sbjct 4084579 CTTAGACATGCAAGGCTTAATCTTTGAGACAAGCAAATG 4084541
>seq3896
Length=3046714
Score = 188 bits (208), Expect = 2e-45
Identities = 305/426 (72%), Gaps = 17/426 (4%)
Strand=Plus/Minus
Query 89 GCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACC 148
|||||| ||||||||||||| | ||||| ||||||||||| ||| ||| ||| |||||
Sbjct 2501497 GCCTGCCTCCTTCCTTGGATGCGTTAGCCATTTCTCAGGCTTCCTTTCCAGAACTGAACC 2501438
Query 149 CTAATTCCCCGTTACCCGTTGATACCATGGTAGGC-CACTATCCTACCATCGAAAGTTGA 207
|| ||| || | | || | | || ||||| ||| || | ||| | | || |||
Sbjct 2501437 CTGATTTCCTATCATCCATGGTCACAATGGTCGGCACAGGAAG-TACTGTTAAGAGCTGA 2501379
Query 208 TAGGGCAGAAATTTGAATGAACCATCGCCGGCTCAAGGCCATGCGATT--CGTTAAGTTA 265
|| | |||| ||| ||| || | | | | | || ||||| || | | | ||||
Sbjct 2501378 TATGACAGATATTGAAATTAATTGTTGTCACCATAGGGGCATGCAGTTGACCTGAGGTTA 2501319
Query 266 TTATGAATCACCAAGGAGCCCCGAAGG---GCGTTGGTTTTTTATCTAATAAATACACCC 322
| || ||||||||| || | | | ||||||||| | | |||||| | |
Sbjct 2501318 TCTAGAGTCACCAAGG-GCTGGGTAAATTTGGGTTGGTTTTGGTT-TGATAAATGCTATC 2501261
Query 323 CTTCCGAAGTC--GGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATG 380
| ||| || | | | | || |||||||||||||||||||| ||||| ||||||||
Sbjct 2501260 C--CCGGAGGCCAGAGCTCATTGGCATGTATTAGCTCTAGAATGACCACAGTTATCCAAA 2501203
Query 381 TA--GTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACT 438
|| | || | | |||| ||| |||||||||||||||||||||| ||||||| |||
Sbjct 2501202 TAAGGCTTGGAGCAACCAAAGGAACCATAACTGATTTAATGAGCCATTTGCAGTTTTACT 2501143
Query 439 GTATAGATTGCTTATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTAC 498
||| | | | | |||||||||| |||||||||||||||||||||||||||||| || |
Sbjct 2501142 GTACTGCTCGGTG-TACTTAGACACGCATGGCTTAATCTTTGAGACAAGCATATG-CTGC 2501085
Query 499 TGGCAG 504
||||||
Sbjct 2501084 TGGCAG 2501079
>seq2384
Length=1614766
Score = 172 bits (190), Expect = 2e-40
Identities = 138/163 (85%), Gaps = 5/163 (3%)
Strand=Plus/Plus
Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTA--GTAAGGTACTATCAAATAA 401
||||||| |||||||||||||||||| |||||||| ||| | || | |||||| |
Sbjct 1118452 GCATGTACTAGCTCTAGAATTACCACAGTTATCCAAGTAAGGCTTGGAGCGATCAAAGGA 1118511
Query 402 ACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGAC 461
||||||||||||||||||||||||||||||||||||| | | | |||||||||
Sbjct 1118512 C--ATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTAACGCCCGTGTGTACTTAGAC 1118569
Query 462 ATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504
|||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1118570 ATGCATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 1118611
>seq878
Length=2697090
Score = 168 bits (186), Expect = 2e-39
Identities = 173/219 (79%), Gaps = 8/219 (4%)
Strand=Plus/Plus
Query 1 GTACTCATTCCAATTACA-AGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59
||||||||| |||||||| || | |||||||| ||||||| ||||| | ||||| |
Sbjct 2326104 GTACTCATTTCAATTACAGAGCCTCAAAAGAGACCTGTAT---TATTTTTCATCACTGCT 2326160
Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119
||| | || |||| |||||||||||| ||||| |||||||||||||||||||||| |
Sbjct 2326161 GCCCTGGGTTGGGAGTGGGTAATTTGCATGCCTGTTGCCTTCCTTGGATGTGGTAGCTTT 2326220
Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGAT-ACCATGG 178
|| |||||||||||||| |||||| |||||| |||| | ||| || |||| ||| ||
Sbjct 2326221 TTTTCAGGCTCCCTCTCTGGAATCAAACCCTGATTCTCAGTTGTCC-ATGATCACCCTGA 2326279
Query 179 TAGG-CCACTATCCTACCATCGAAAGTTGATAGGGCAGA 216
|||| || | || || ||||||||||||||||||
Sbjct 2326280 TAGGAACAGGA-AATATCACTGAAAGTTGATAGGGCAGA 2326317
>seq7908
Length=8959126
Score = 165 bits (182), Expect = 2e-38
Identities = 176/227 (78%), Gaps = 4/227 (2%)
Strand=Plus/Plus
Query 2 TACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60
||||||||||| ||| | | || | |||| |||||||| ||||| ||||||| |
Sbjct 1736693 TACTCATTCCAGTTATAGGGCCTCGTAAGAACCCTGTATTGTTATTTTCCCTCACTACTT 1736752
Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120
||| | || ||| ||| |||||||| ||||| |||||||||||||| ||||||| |||
Sbjct 1736753 CCCTGGATCAGGAGTGGATAATTTGCATGCCTGTTGCCTTCCTTGGATATGGTAGCTGTT 1736812
Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180
||||| |||||||||| |||||| ||||| ||||||| | |||| | | | ||||||||
Sbjct 1736813 TCTCA-GCTCCCTCTCTGGAATCCAACCCAGATTCCCCATCACCCATGGTTGCCATGGTA 1736871
Query 181 GGC-CACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATG 226
||| || | | ||||||| || |||||| |||| | ||| ||||
Sbjct 1736872 GGCACAGGAAGC-ACCATCGGAAATTGATAAGGCAAACATTCAAATG 1736917
>seq443
Length=323957
Score = 161 bits (178), Expect = 3e-37
Identities = 236/319 (74%), Gaps = 20/319 (6%)
Strand=Plus/Plus
Query 201 AAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC-TCAAGGCCATGCGATTCGTT 259
|||||||||||||||| ||| ||||| | | | || | | ||| ||||||| |
Sbjct 90390 AAGTTGATAGGGCAGACATTCGAATGCATCGTTGCTGCTATGGAGGTG-TGCGATTGGCC 90448
Query 260 --AAGTTATTATGAATCACCAAGG-AGCCCCGAAGGGC---GTTGGTTTTTTATCTAATA 313
|| |||| || ||||||| | ||| | | | | ||||||||| ||| |||
Sbjct 90449 CGAAATTATCTAGAGTCACCAAAGCAGCTGGGCAAGCCCGGGTTGGTTTTGG-TCTGATA 90507
Query 314 AATACACCCCTTCC--GAAGTCGGGGTTTTT-AGCATGTATTAGCTCTAGAATTACCACG 370
||| ||| | || || ||| | | | |||||||||||||||||||||||||||
Sbjct 90508 AATGCACATATCCCCGGAGGTCAGCACTCGTCAGCATGTATTAGCTCTAGAATTACCACA 90567
Query 371 GTTATCCATGTA--GTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTCG 428
|||||||| ||| | || | ||| || ||| ||||| ||||||||||||||| |
Sbjct 90568 GTTATCCAAGTAAGGCTTGGAGCGATCCAAGGAACCCTAACTAATTTAATGAGCCATTTG 90627
Query 429 CAGTTTCACTGTATAG--ATTGCTTATACTTAGA-CATGCATGGCTTAATCTTTGAGACA 485
||||||||||||| | ||| | |||||||| |||||||||||||||||||||||||
Sbjct 90628 CAGTTTCACTGTAACGCCCTTG--TTTACTTAGACCATGCATGGCTTAATCTTTGAGACA 90685
Query 486 AGCATATGACTACTGGCAG 504
|||||||| |||| |||||
Sbjct 90686 AGCATATG-CTACAGGCAG 90703
>seq3736
Length=3466063
Score = 159 bits (176), Expect = 1e-36
Identities = 124/145 (86%), Gaps = 2/145 (1%)
Strand=Plus/Plus
Query 1 GTACTCATTCCAATTACAAGACC-CAAAAGAGCCCTGTATCAGTATTTATTG-TCACTAC 58
|||||||||||||||||| | || ||||| || ||||||| ||||| || ||||||
Sbjct 1741104 GTACTCATTCCAATTACAGGGCCTCAAAAAAGTCCTGTATTGTTATTTTTTCATCACTAT 1741163
Query 59 CTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCG 118
|||||| || |||| ||||||||||| | ||||||||||||||||||||||| |||||
Sbjct 1741164 CTCCCCAGGTTGGGAGTGGGTAATTTGTGAGCCTGCTGCCTTCCTTGGATGTGATAGCCA 1741223
Query 119 TTTCTCAGGCTCCCTCTCCGGAATC 143
|||||| ||||||||||||||||||
Sbjct 1741224 TTTCTCGGGCTCCCTCTCCGGAATC 1741248
>seq3900
Length=2217464
Score = 140 bits (154), Expect = 1e-30
Identities = 161/214 (75%), Gaps = 2/214 (1%)
Strand=Plus/Plus
Query 4 CTCATTCCAATTACAAG-ACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCC 62
||||||||| ||||||| | | ||| ||||||| ||||| | |||||||||||
Sbjct 846823 CTCATTCCAGTTACAAGGAGTTGACAGAATCCTGTATTGTTATTTTTCATCACTACCTCC 846882
Query 63 CCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTC 122
|| ||| || ||| ||||| || |||| |||||||||||||||| ||||| |||||
Sbjct 846883 CCAGGTCAGGGGTGGAAAATTTT-GCACCTGGTGCCTTCCTTGGATGTAGTAGCTGTTTC 846941
Query 123 TCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGG 182
||||||||||||| | | || |||| | || |||| |||| | | ||||| ||||
Sbjct 846942 TCAGGCTCCCTCTTTGTTACTGAGCCCTGAGTCACCGTCACCCATGGTCACCATAATAGG 847001
Query 183 CCACTATCCTACCATCGAAAGTTGATAGGGCAGA 216
||| |||||| ||||||||| ||||||||
Sbjct 847002 CCAAGGAAGTACCATTGAAAGTTGAGAGGGCAGA 847035
>seq3754
Length=10286911
Score = 131 bits (144), Expect = 5e-28
Identities = 142/183 (78%), Gaps = 4/183 (2%)
Strand=Plus/Minus
Query 35 TGTATCAGTATTTATTGTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGC 94
||||| |||| |||||||||||||||| ||| |||| |||||||||||| | |||||
Sbjct 8420095 TGTATTGTTATTCTTTGTCACTACCTCCCCATGTTGGGAGTGGGTAATTTGCACACCTGC 8420036
Query 95 TGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATT 154
||||||||||||||| |||| |||||| |||| |||||| ||| | |||||| | |
Sbjct 8420035 CACCTTCCTTGGATGTGCTAGCTGTTTCTACGGCTTCCTCTCTGGATTAAAACCCTGAAT 8419976
Query 155 CCCCGTTACCCGTTGAT-ACCATGGTA-GGCCAC-TATCCTACCATCGAAAGTTGATAGG 211
| ||| ||| | |||| ||||||| | |||||| | || |||||||||||||
Sbjct 8419975 CTCCGACACCTG-TGATCACCATGGAAGGGCCACAGGAAGAATGATTGAAAGTTGATAGG 8419917
Query 212 GCA 214
|||
Sbjct 8419916 GCA 8419914
>seq7735
Length=5406674
Score = 87.8 bits (96), Expect = 5e-15
Identities = 69/82 (84%), Gaps = 2/82 (2%)
Strand=Plus/Minus
Query 347 TGTATTAGCTCTAGAATTACCACGGTTATCCATGTA--GTAAGGTACTATCAAATAAACG 404
||||||||||||||||||||||| |||||||| ||| | || | |||||| |||
Sbjct 2113443 TGTATTAGCTCTAGAATTACCACTGTTATCCAAGTAAGGCTTGGAGCAATCAAAGGAACC 2113384
Query 405 ATAACTGATTTAATGAGCCATT 426
||||||||||||||||||||||
Sbjct 2113383 ATAACTGATTTAATGAGCCATT 2113362
>seq4492
Length=5486485
Score = 80.6 bits (88), Expect = 8e-13
Identities = 81/108 (75%), Gaps = 12/108 (11%)
Strand=Plus/Plus
Query 76 GGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCT 135
|||||||| || |||||||||||||||||||| |||||||||||| |||
Sbjct 5429140 GGGTAATTGGCACGCCTGCTGCCTTCCTTGGACGTGGTAGCCGTT------------TCT 5429187
Query 136 CCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGC 183
|| |||||||||| |||| || | |||| | | ||| ||||||||
Sbjct 5429188 CCAGAATCGAACCTGGATTCACCATCACCCATGGTCACCGTGGTAGGC 5429235
>seq2734
Length=5575459
Score = 80.6 bits (88), Expect = 8e-13
Identities = 70/86 (81%), Gaps = 1/86 (1%)
Strand=Plus/Minus
Query 1 GTACTCATTCCAATTACA-AGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59
|||||||||||||||||| || | | |||||| ||||||| ||||| | ||||||||
Sbjct 3520313 GTACTCATTCCAATTACAGAGTCTCGAAAGAGTCCTGTATTGTTATTTTTCATCACTACC 3520254
Query 60 TCCCCGTGTCGGGATTGGGTAATTTG 85
|||||| | ||| |||||||||||
Sbjct 3520253 TCCCCGAATTAGGAGTGGGTAATTTG 3520228
>seq7806
Length=408021
Score = 75.2 bits (82), Expect = 3e-11
Identities = 74/96 (77%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 90 CCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCC 149
||||||| || |||||||| ||||| |||||||||||| ||||| | ||||||
Sbjct 94423 CCTGCTGTTGTCTTTGGATGTTGTAGCATTTTCTCAGGCTCTCTCTCTGATGGAGAACCC 94482
Query 150 TAATTCCCCGTTACCCGTTGATACCATGGTAGGCCA 185
| ||||||| |||||| | |||||||||| |||
Sbjct 94483 TGATTCCCCATTACCCACGGTCACCATGGTAGACCA 94518
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1510099369984
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