Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogona_20vitticeps_20[refseq_20GCF_5F900067755.1_202017-02-28] 13,749 sequences; 1,716,675,060 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq444 239 7e-61 seq156 156 7e-36 seq595 136 6e-30 seq1045 131 3e-28 seq5 113 7e-23 seq513 91.5 2e-16 seq106 84.2 3e-14 seq59 77.0 5e-12 seq301 75.2 2e-11 seq18 75.2 2e-11 >seq444 Length=1145637 Score = 239 bits (264), Expect = 7e-61 Identities = 206/251 (82%), Gaps = 12/251 (5%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||| || ||| |||| | ||||||||||||||||||||||||||||||| | Sbjct 1011026 GTCAGTGTAGCACGTGTGTAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC-T 1011084 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTC 134 ||| || | |||||| | |||| | |||||||||||||| | | |||||| | || Sbjct 1011085 CAATCT-CAGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGACGCCAACCGT--TC 1011141 Query 135 GATGGGGC-------TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 | ||| | || |||||| | || ||||||||| ||||||||||||||| ||| Sbjct 1011142 -AGGGGCCGCATAACTACTTAGCATGCTAGAGTCTCGTTCATTATCGGAATTAACCTGAC 1011200 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 ||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||||| Sbjct 1011201 AAATCGTTCCACCAACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCT 1011260 Query 248 ATCAATCTGTC 258 ||||||||||| Sbjct 1011261 ATCAATCTGTC 1011271 >seq156 Length=2933057 Score = 156 bits (172), Expect = 7e-36 Identities = 171/223 (77%), Gaps = 6/223 (3%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 || || || | | || |||||||| | ||||| |||| | |||||||||||||||||||| Sbjct 855128 ACACGCTGACCCAGTTAGTGTAGCACACGTGCAGCCCTGGACATCTAAGGGCATCACAGA 855069 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 ||||||||||| ||| || || ||||| | |||| | ||||||||||||| | | Sbjct 855068 CCTGTTATTGC-TCAGTCTCGGAT-GGCTGAATGCCACTTATCCCTCTAAGAAGTTGGAC 855011 Query 122 ACCAACCA-TAGTCGATGGGG---CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177 | ||| | | | | | | ||| ||| || | | |||||||||||||| | || Sbjct 855010 GCTGACCGCTCGGGGGTCGCGTAACTAGTTACCATATCAGAGTCTCGTTCGTTATTGAAA 854951 Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCAC 220 |||||||||||||||| ||||||||||||||||||||||| || Sbjct 854950 TTAACCAGACAAATCAATCCACCAACTAAGAACGGCCATGGAC 854908 >seq595 Length=758645 Score = 136 bits (150), Expect = 6e-30 Identities = 178/242 (74%), Gaps = 11/242 (5%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 |||||| ||| | | ||| ||| | |||||| |||||||||||| ||||||||||| | Sbjct 436772 GTCAGTCTAGTGTGTGTGTAGCCATGGACATCTTAGGGCATCACAGGCCTGTTATTGC-T 436714 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCA--TAG 132 ||| || | |||||| | |||| | | |||||| | ||| | |||| | | | | Sbjct 436713 CAATCT-CAGGTGGCTGAATGCCACTTGCCCCTCTGAAAAGTTGGACACCCAACTGCTTG 436655 Query 133 TCGATGG---GGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAA 189 ||| | | || |||||| | | |||| |||| ||||||||||||| || | Sbjct 436654 GGGATTGCATGAGTACTTAGCATGGCAGAGTCTTGTTCATTATCGGAATTAATCA----A 436599 Query 190 ATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTAT 249 || |||| ||| ||||||| |||||| ||||||||||| ||||| ||||||||||||| Sbjct 436598 ATTGTTCCATCAATTAAGAACAGCCATGTACCACCACCCACAGAATGAAGAAAGAGCTAT 436539 Query 250 CA 251 || Sbjct 436538 CA 436537 >seq1045 Length=234609 Score = 131 bits (144), Expect = 3e-28 Identities = 99/117 (85%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | || ||||||| ||||| ||||||| |||||||||| |||||||| Sbjct 169254 CTAGTTAGCATGCTAGACTCTCGTTTATTATCAGAATTAATCAGACAAATCGCTCCACCA 169195 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||| || ||||||||||||| | |||||| ||||||||||||||||||||| Sbjct 169194 ACTAAGATTGGTCATGCACCACCACATACAGAATCGAGAAAGAGCTATCAATCTGTC 169138 >seq5 Length=10472086 Score = 113 bits (124), Expect = 7e-23 Identities = 182/260 (70%), Gaps = 20/260 (8%) Strand=Plus/Plus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 |||||| || | || || |||| | |||||||| |||||||||||||| ||||||| | Sbjct 4543475 GTCAGTATAATGTGCATGTAGCCCTGGACATCTAAAGGCATCACAGACCTCTTATTGC-T 4543533 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTC 134 | ||| | ||||| | ||| | || |||||||||| | | | || || | Sbjct 4543534 CTGTCTTGGGT-GGCTGAATACCATTTGTTGCTCTAAGAAGTTGGACGCTGAC--TACTT 4543590 Query 135 GATGGGGCTATT-------TAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGAC 187 | | | | | ||||| | | |||| ||| ||| | |||||||||||||| Sbjct 4543591 GGGGAGTCACATCATAAGCTAGCATGCCAGAGTCTTGTTTGTTCTTGGAATTAACCAGAC 4543650 Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCAC---------CACCCATAGAATCAA 238 |||||||||||||||||||| | |||||||||| | ||| || |||||||| Sbjct 4543651 AAATCACTCCACCAACTAAGGATAGCCATGCACCCCCCTCACACACACACACAGAATCAA 4543710 Query 239 GAAAGAGCTATCAATCTGTC 258 ||||||||||| | || ||| Sbjct 4543711 GAAAGAGCTATTAGTCGGTC 4543730 >seq513 Length=957682 Score = 91.5 bits (100), Expect = 2e-16 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | |||||||| |||||| ||||||||||||| |||| |||||||| Sbjct 877213 CTAGTTAGCATGCCAGAGTCTCGTTGGTTATCAGAATTAACCAGACGAATCGCTCCACCA 877154 Query 202 ACTAAGAACGGCCATGCA 219 ||||||||| |||||||| Sbjct 877153 ACTAAGAACAGCCATGCA 877136 Score = 87.8 bits (96), Expect = 3e-15 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | |||||||| |||||| |||||||||||| |||| |||||||| Sbjct 877587 CTAGTTAGCATGCCAGAGTCTCGTTGGTTATCAGAATTAACCAGATGAATCGCTCCACCA 877528 Query 202 ACTAAGAACGGCCATGCA 219 ||||||||| |||||||| Sbjct 877527 ACTAAGAACAGCCATGCA 877510 >seq106 Length=3577317 Score = 84.2 bits (92), Expect = 3e-14 Identities = 49/51 (96%), Gaps = 0/51 (0%) Strand=Plus/Plus Query 160 TCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAAC 210 ||||||||||||| ||||||||||||||||||||||||||||||||| ||| Sbjct 1243403 TCTCGTTCGTTATTGGAATTAACCAGACAAATCACTCCACCAACTAAAAAC 1243453 >seq59 Length=4562165 Score = 77.0 bits (84), Expect = 5e-12 Identities = 74/95 (78%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| | |||| | | ||||| ||| ||||| |||||||||||||| || |||||| | Sbjct 930972 CTAGTCAGCATGCCAGGGTCTTGTTTGTTATTGGAATTAACCAGACGAACTCCTCCACTA 930913 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATC 236 |||||||| |||||| || | || ||| |||||| Sbjct 930912 GCTAAGAACAGCCATGAACTATCATCCACAGAATC 930878 >seq301 Length=1716842 Score = 75.2 bits (82), Expect = 2e-11 Identities = 69/86 (80%), Gaps = 1/86 (1%) Strand=Plus/Plus Query 169 TTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCC 228 |||| ||||| |||| ||||||| ||||| | ||| ||| ||||| ||||| || || Sbjct 130419 TTATTGGAATGAACCGGACAAATTGCTCCAGCCACTCGGAAGGGCCAGGCACCTCCGCC- 130477 Query 229 ATAGAATCAAGAAAGAGCTATCAATC 254 | |||||| ||||| ||||||||||| Sbjct 130478 AGAGAATCGAGAAAAAGCTATCAATC 130503 >seq18 Length=7230300 Score = 75.2 bits (82), Expect = 2e-11 Identities = 78/102 (76%), Gaps = 4/102 (4%) Strand=Plus/Plus Query 160 TCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCA 219 |||| || | |||| |||||||||||||||| ||| || |||||||| | ||| Sbjct 3905179 TCTCATTTGGTATCCAAATTAACCAGACAAATGGCTCAGTCAGCTAAGAACAGTCATCTG 3905238 Query 220 CCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTCCTC 261 ||| || ||||||||||| ||| ||||| |||||||||| Sbjct 3905239 CCAACA----TAGAATCAAGAGAGAACTATCCATCTGTCCTC 3905276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796693871469