Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pogona_20vitticeps_20[refseq_20GCF_5F900067755.1_202017-02-28] 13,749 sequences; 1,716,675,060 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq1182 284 2e-74 seq1457 264 2e-68 seq1120 264 2e-68 seq345 197 2e-48 seq124 138 2e-30 seq285 131 3e-28 seq159 123 4e-26 seq251 118 2e-24 seq134 78.8 2e-12 >seq1182 Length=153633 Score = 284 bits (314), Expect = 2e-74 Identities = 201/230 (87%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 64 CGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATT 123 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 70270 CGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTGAATT 70329 Query 124 CTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAA 183 ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 70330 CTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTATGAA 70389 Query 184 CGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAA 243 |||||||| ||||||||||||||||||||||||||||||||||| |||||| || | || Sbjct 70390 CGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCTTAAA 70449 Query 244 ATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | | | | |||||||| ||||| | |||||| ||| ||||||| Sbjct 70450 ACCCAAAAAGTCAGAAGGATCGTGAGGCCCCGCTTTCACGGTCTGTATTC 70499 >seq1457 Length=59721 Score = 264 bits (292), Expect = 2e-68 Identities = 215/263 (82%), Gaps = 11/263 (4%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| Sbjct 25104 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTTTCGTTCCCTA 25045 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 |||| ||||||||||||||| |||| |||||||||||| ||||||||||||||||| Sbjct 25044 TTAGAGGGTGAACAATCCAATGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGA 24985 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 |||||||||||||||| || |||| |||||||||||||||| ||||||||| Sbjct 24984 CATCGAAGGATCAAAAGGCGACGTTGCTATGAACGCTTGGCCGCCACAAGC--------- 24934 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 |||||||| |||||| |||||| || | ||| | | | |||||||| ||| Sbjct 24933 --GTGGTAACCTTTCTGACACCTCCTGCTTAAAACCCAAAAAGTCAGAAGGATCGTGAGG 24876 Query 271 CCACACTTTCATGGTTTGTATTC 293 || | |||||| ||| ||||||| Sbjct 24875 CCCCGCTTTCACGGTCTGTATTC 24853 >seq1120 Length=185179 Score = 264 bits (292), Expect = 2e-68 Identities = 218/265 (82%), Gaps = 2/265 (1%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 71614 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTG 71673 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||| ||| | | || ||||| |||||||||||||||| Sbjct 71674 TTAGTGGGTGAACAATCCAACACTTGGCAATTTTCGCTTCACCATGATAGGAAGAGCCGT 71733 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||||||||||| |||| ||| | || ||| |||||||||||||||||| Sbjct 71734 CATCGAAGGATCAAAAAGCGACGTTGCTCAGGCTGCGCGGCCGCCACAAGCCAGTTATCC 71793 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAA--AGGATCGATA 268 ||||||||||||||||| |||||| || | ||| | | | | ||||||| | Sbjct 71794 CTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAAAAGTCAGGAGGATCGCGA 71853 Query 269 GGCCACACTTTCATGGTTTGTATTC 293 |||| | ||||| ||| ||||||| Sbjct 71854 GGCCCCGCTTTCGCGGTCTGTATTC 71878 >seq345 Length=1524142 Score = 197 bits (218), Expect = 2e-48 Identities = 190/243 (78%), Gaps = 3/243 (1%) Strand=Plus/Minus Query 51 ACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAA 110 || |||||| ||||||||||| |||||||||||||| |||||||||||| |||||||||| Sbjct 1301215 ACGTGTCTCCTGACGGTCTAATCCCAGCTCACGTTCGCTATTAGTGGGTAAACAATCCAA 1301156 Query 111 CGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCA 170 |||| |||||||||||| | ||||| |||||| |||||| ||||||||||||||| Sbjct 1301155 TGCTT---GAATTCTGCTTCACAAGGATAGAAAGAGCTGACATCAAAGGATCAAAAAGCA 1301099 Query 171 ACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCA 230 || || ||||||| |||||||||| |||| |||| || || ||||||||||||| | Sbjct 1301098 ACCTCACTATGAATGCTTGGCTGCTGCAAGTGAGTTTCCCTTGAGGTAACTTTTCTGAAA 1301039 Query 231 CCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTA 290 | || || | ||| | | | || |||| |||||| | |||||| | | || | Sbjct 1301038 CTTCCTGCTTAAAACCCGAAAAGTCAGAAAGATCACTAGGCCCCGCTTTCACGATCTGCA 1300979 Query 291 TTC 293 ||| Sbjct 1300978 TTC 1300976 >seq124 Length=3278127 Score = 138 bits (152), Expect = 2e-30 Identities = 159/213 (75%), Gaps = 7/213 (3%) Strand=Plus/Minus Query 29 GGTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCC 88 || ||| || || ||||||||| ||||||| || ||||||||||||| |||| ||||| Sbjct 2424548 GGGCATGAGCTGGCTAAAACTAAACTGTCTCCTGGTGGTCTAAACCCAGGTCACATTCCC 2424489 Query 89 TATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCC 148 | | ||| || | |||||||| ||||| | ||||||||| | ||||| ||| Sbjct 2424488 TGCTTGTGAGTAAGCAATCCAATGCTTAGTCAGTTCTGCTTCACAAGGATAGATTGAGTT 2424429 Query 149 GACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCT---TGGCTGC----CACAAGC 201 |||| |||||||||| ||| || | |||||||| ||| || ||| ||||||| Sbjct 2424428 GACACTGAAGGATCAACAAGTGACATTGCTATGAATGCTGAATGCTTGCCCATCACAAGC 2424369 Query 202 CAGTTATCCCTGTGGTAACTTTTCTGGCACCTC 234 | ||||||||||| |||||||||| ||| || Sbjct 2424368 AAATTATCCCTGTGACAACTTTTCTGACACTTC 2424336 >seq285 Length=1848942 Score = 131 bits (144), Expect = 3e-28 Identities = 118/147 (80%), Gaps = 1/147 (1%) Strand=Plus/Minus Query 147 CCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTT 206 ||||||||||||||||||||||| || | |||||||| ||||||| ||||||||||| || Sbjct 1228356 CCGACATCGAAGGATCAAAAAGCGACATTGCTATGAATGCTTGGCCGCCACAAGCCAATT 1228297 Query 207 ATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGA 266 ||||||||||||||||||||| |||||| | || ||| | | | |||||| | Sbjct 1228296 ATCCCTGTGGTAACTTTTCTGACACCTCCTG-CTTAAACCCAAAAAGGCAGAAGGATTGT 1228238 Query 267 TAGGCCACACTTTCATGGTTTGTATTC 293 | ||| | |||||| ||| ||||||| Sbjct 1228237 GAAGCCCCGCTTTCACGGTCTGTATTC 1228211 >seq159 Length=2892432 Score = 123 bits (136), Expect = 4e-26 Identities = 95/113 (84%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 ||||| || ||||| |||| || ||||||||| ||||| || ||||| |||||||||| Sbjct 2124868 ATCAGCAGAGTAAAGCTAAACTATCTCATGACCATCTAAGCCAAGCTCTTGTTCCCTATT 2124927 Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGA 145 |||| |||||||||||||||||| |||||||||||| |||||||||||| Sbjct 2124928 AGTGAGTGAACAATCCAACGCTTGGTGAATTCTGCTTCATAATGATAGGAAGA 2124980 >seq251 Length=2079591 Score = 118 bits (130), Expect = 2e-24 Identities = 80/90 (89%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 134 ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTG 193 ||| ||||||| ||| |||| |||||||||||||| | ||||||||| | ||||||||| Sbjct 376578 ATGTTAGGAAGGGCCAACATTGAAGGATCAAAAAGTGATGTCGCTATGGATGCTTGGCTG 376637 Query 194 CCACAAGCCAGTTATCCCTGTGGTAACTTT 223 ||||||||||||| |||||||||||||||| Sbjct 376638 CCACAAGCCAGTTTTCCCTGTGGTAACTTT 376667 >seq134 Length=3229045 Score = 78.8 bits (86), Expect = 2e-12 Identities = 87/116 (75%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 || ||||||||| |||| ||| ||| ||| ||| ||| || || ||| ||||||| Sbjct 1378708 TCTTCAGTAGGGCAAAATTAAGTTGTTTCACAGTGGTATAATCCTAGTTCATATTCCCTA 1378649 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAG 146 ||| ||||||| | ||||| | ||| ||||||||||| || |||||||||| Sbjct 1378648 TTAATGGGTGACCGATCCAGCACTTGGTAAATTCTGCTTCACAATCATAGGAAGAG 1378593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854282528544