Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq11759 259 7e-67 seq17630 159 5e-37 seq49 127 3e-27 seq161 122 1e-25 >seq11759 Length=7209 Score = 259 bits (286), Expect = 7e-67 Identities = 199/232 (86%), Gaps = 3/232 (1%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| ||| |||| ||||||| |||||||||||| ||| | Sbjct 2522 GTACAAAGGGCAGGGACGTAATCAGCGCAAGCT-GATGACTTGCGCTTACTAGGCATT-C 2465 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 |||||| |||| || |||| |||| ||||||||||||||| ||| | |||||| |||| Sbjct 2464 CTCGTTAAAGATTAATAATTACAATAATCTATCCCCATCACAATGCACATTCAAAAGATT 2405 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 ||| | | | |||||||| ||| ||| |||| |||||||| |||||||||||||| Sbjct 2404 ACCTAAGCTTACCAGCCAAGGTTATAAACTTGTTGGATACATCATTGTAGCGCGCGTGCA 2345 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTG 231 ||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 2344 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCTTG 2293 >seq17630 Length=3150 Score = 159 bits (176), Expect = 5e-37 Identities = 170/219 (78%), Gaps = 4/219 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| ||| ||||| |||||| || ||||| ||||||| | Sbjct 1 GTACAAAGGGCAGGGACGTAATCAGCGCAAGCTT-ATGACTTGCACTTACCAGGAATT-C 58 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAA-ATTTCAAAGATT 119 |||||| | | ||||||||||| | ||||| |||||| | || | || || Sbjct 59 CTCGTTCACGGGGAACAATTGCAAGCCCCGATCCCAGTCACGACGGTGATGATACAGTTT 118 Query 120 ACCCGGACCTGTC-GGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 ||| ||| || ||||| | | | ||||| |||| | ||| |||||||| ||||| Sbjct 119 GCCCAACCCTCTCAGGCCAGGATTCCAAACTCGCTGAAACCGTCATTGTAGCGCACGTGC 178 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 ||||| | ||||||||||||||||||||||||||||||| Sbjct 179 GGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 217 >seq49 Length=351248 Score = 127 bits (140), Expect = 3e-27 Identities = 152/201 (76%), Gaps = 4/201 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| ||| ||| ||||| |||||| || ||||| ||||||| | Sbjct 351050 GTACAAAGGGCAGGGACGTAATCAGCGCAAGCTT-ATGACTTGCACTTACCAGGAATT-C 351107 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAA-ATTTCAAAGATT 119 |||||| | | ||||||||||| | ||||| |||||| | || | || || Sbjct 351108 CTCGTTCACGGGGAACAATTGCAAGCCCCGATCCCAGTCACGACGGTGATGATACAGTTT 351167 Query 120 ACCCGGACCTGTC-GGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 ||| ||| || ||||| | | | ||||| |||| | ||| |||||||| ||||| Sbjct 351168 GCCCAACCCTCTCAGGCCAGGATTCCAAACTCGCTGAAACCGTCATTGTAGCGCACGTGC 351227 Query 179 GGCCCAGAACATCTAAGGGCA 199 ||||| | ||||||||||||| Sbjct 351228 GGCCCCGGACATCTAAGGGCA 351248 >seq161 Length=187407 Score = 122 bits (134), Expect = 1e-25 Identities = 133/173 (77%), Gaps = 3/173 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||||||||| ||||| ||| |||||| |||| ||| Sbjct 173490 GTACAAAGGGCAGGGACTTAATCAACGCGAGCTT-ATGACCCGCACTTACTGGGAA-TTC 173547 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACG-ATGAAATTTCAAAGATT 119 |||||| | | || ||||||||| | |||||||||||| ||| || | | || Sbjct 173548 CTCGTTCATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTT 173607 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGC 172 ||||| |||||||||| ||| | | || || ||| |||||||||||| Sbjct 173608 ACCCGCACCTGTCGGCGTAGGGTAGACACACGCTGAGCCAGTCAGTGTAGCGC 173660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751619140200