Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq11759 122 5e-26 seq6766 113 3e-23 seq2033 82.4 4e-14 >seq11759 Length=7209 Score = 122 bits (134), Expect = 5e-26 Identities = 100/121 (83%), Gaps = 7/121 (6%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTC----AAAATGATAACATC 56 |||||||||||||||||||||||||||||||| || | ||| | | || || || Sbjct 1993 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCTGAAGGGGTCGTTTAGTAAGACGACCTC 1934 Query 57 GCCCGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCG 116 | ||| ||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1933 ---CAATCTCTAGTCGGCATAGTTTATAGTTAAGACTACGACGGTATCTGATCGTCTTCG 1877 Query 117 A 117 | Sbjct 1876 A 1876 >seq6766 Length=16663 Score = 113 bits (124), Expect = 3e-23 Identities = 95/117 (81%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| || ||| |||| ||| |||| ||||| |||| Sbjct 2571 GAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCCGGCGGGTCATGGGAATAACGCCGCCG 2630 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||| ||||||||||| ||||| ||| ||||||||||||||||||||||||||| Sbjct 2631 GATCGCTAGTCGGCATCGTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTCGA 2687 >seq2033 Length=149178 Score = 82.4 bits (90), Expect = 4e-14 Identities = 80/103 (78%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 |||||||||||||||| |||| | ||| |||| || |||| ||||| |||| Sbjct 67564 GAACCCAAAGACTTTGGTTTCCCAGAAGCTGCCCGGCAGGTCATGGGAATAACGCCGCCG 67505 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTAT 103 |||| ||||||||||| ||||| |||| ||||||||||||| Sbjct 67504 GATCGCTAGTCGGCATCGTTTATGGTTGGAACTACGACGGTAT 67462 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278263549200