Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq11759 214 3e-53 seq17630 185 2e-44 seq560 75.2 2e-11 >seq11759 Length=7209 Score = 214 bits (236), Expect = 3e-53 Identities = 203/255 (80%), Gaps = 7/255 (3%) Strand=Plus/Plus Query 67 CAGGACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGC---CTTTGCTCGAATACA 123 ||||| ||||||||||| |||||||||||||| |||||||| | || | |||||| Sbjct 1624 CAGGATTTTTACTTTGAGAAAATTAGAGTGTTTCAAGCAGGCTAACGTT--TTGAATACT 1681 Query 124 TTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCG 183 |||||||||||||| ||||||| | | ||||| || ||||||| || || Sbjct 1682 GCAGCATGGAATAATAAAATAGGATTTTAG-TTCTACGTTATTGGTTTTAAGAACTAAAT 1740 Query 184 TAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTG 243 |||||||| |||||| ||| ||||| | ||||| || ||||||||||||||||||| Sbjct 1741 TAATGATTGATAGGGGCAGTTGGGGGCATTTGTATTTAACTGTCAGAGGTGAAATTCTTA 1800 Query 244 GATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTG 303 ||||| || ||||| |||||||||||||| || |||| ||||||||||||||||| | Sbjct 1801 GATTTGTTAAAGACATACTACTGCGAAAGCATTTGCCAAAGATGTTTTCATTAATCA-AG 1859 Query 304 AACGAAAGTTAGGGG 318 ||||||||||||||| Sbjct 1860 AACGAAAGTTAGGGG 1874 >seq17630 Length=3150 Score = 185 bits (204), Expect = 2e-44 Identities = 217/285 (76%), Gaps = 10/285 (4%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGG--GGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTG 96 ||||| |||| |||||| ||| | | | | || ||||||||||| ||||| ||||| Sbjct 995 ATGCCTTTCAACGGGTGT--CGGATGCGGACGGCACGTTTACTTTGAACAAATTTGAGTG 938 Query 97 TTCAAAGCAGGCCTTTGCTC--GAATACATTAGCATGGAATAATAGAATAGGACGTGCGG 154 |||||||||||| | | | ||| | | |||||||||||| |||||||| | ||| Sbjct 937 CTCAAAGCAGGCCATAGAGCCTGAAAATTCTTGCATGGAATAATGAAATAGGACTT-CGG 879 Query 155 TTCTATTTTGTTGGTTTCTAGGA-CCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTC 213 ||||||||||||||||| | ||| ||| |||||| |||| ||||| || |||||| | Sbjct 878 TTCTATTTTGTTGGTTT-TCGGATCCGAAGTAATGGTTAAGAGGGACAGACGGGGGCATT 820 Query 214 AGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGC 273 |||| ||| ||||||||||||||||||| |||| |||||| |||||||| Sbjct 819 TGTATGGCGGTGTTAGAGGTGAAATTCTTGGATCGCCGCCAGACAAACTACAGCGAAAGC 760 Query 274 GTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 || ||||||||||||||||| ||| | || ||||||| || || Sbjct 759 ATTTGCCAAGGATGTTTTCATTGATCTG-GAGCGAAAGTCAGAGG 716 >seq560 Length=832011 Score = 75.2 bits (82), Expect = 2e-11 Identities = 73/93 (78%), Gaps = 1/93 (1%) Strand=Plus/Minus Query 117 GAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGG 176 |||||| ||| |||||||| ||||||||| | |||||||||||||||||||| | Sbjct 695968 GAATACTCCAGCTAGGAATAATGGAATAGGAC-TCCGGTTCTATTTTGTTGGTTTTCGGA 695910 Query 177 ACCGCCGTAATGATTAATAGGGATAGTCGGGGG 209 |||| | |||||||| ||||| | |||||| Sbjct 695909 ACCGGGGCCATGATTAAGAGGGACGGCCGGGGG 695877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914721533440