Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq49 163 1e-37 seq551 131 7e-28 seq11759 129 2e-27 seq161 122 4e-25 seq197 118 4e-24 seq9618 105 3e-20 seq9170 105 3e-20 >seq49 Length=351248 Score = 163 bits (180), Expect = 1e-37 Identities = 117/135 (87%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 549 GAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAG 608 ||| | |||| || ||||| |||||||||||||||||||||||| || ||| ||||| Sbjct 348379 GAGCATGAGCGTACATGTTGAGACCCGAAAGATGGTGAACTATGCTTGCGCAGGTTGAAG 348320 Query 609 CCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATT 668 |||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||| Sbjct 348319 CCAGAGGAAACTCTGGTGGAGGACCGCAGCGATTCTGACGTGCAAATCGATCGTCAAACG 348260 Query 669 TGGGTATAGGGGCGA 683 || |||||||||||| Sbjct 348259 TGAGTATAGGGGCGA 348245 >seq551 Length=436750 Score = 131 bits (144), Expect = 7e-28 Identities = 98/115 (85%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 ||||||||||||||||||||||||| || || | |||||||||||||||||||||||| Sbjct 321952 GGACCCGAAAGATGGTGAACTATGCATGGGCAGAGCGAAGCCAGAGGAAACTCTGGTGGA 322011 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || || |||||| ||| ||||||||||| | ||| || |||||||||||| || Sbjct 322012 GGTCCGTAGCGGTCCTGACGTGCAAATCGGTTGTCCAACCTGGGTATAGGGGAGA 322066 >seq11759 Length=7209 Score = 129 bits (142), Expect = 2e-27 Identities = 112/139 (81%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 545 ATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGT 604 ||| |||||| ||| | |||| ||||||||||||||||||||||||||||| ||| | Sbjct 4210 ATTAGAGTAATAGCGTGTTTGTTAGGACCCGAAAGATGGTGAACTATGCCTGAGTAGAAT 4269 Query 605 GAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCA 664 ||| ||| |||| ||| |||| | | | ||| | ||| ||||||||||| | |||| Sbjct 4270 TAAGTCAGGTGAAAACCTGATGGAAGTTTGTAGCAATACTGACGTGCAAATCGTTTGTCA 4329 Query 665 AATTTGGGTATAGGGGCGA 683 ||||||||||||||||||| Sbjct 4330 AATTTGGGTATAGGGGCGA 4348 Score = 78.8 bits (86), Expect = 4e-12 Identities = 97/129 (75%), Gaps = 8/129 (6%) Strand=Plus/Plus Query 78 TAAATTTCTTCTAAAGCTAAATAT----TGGCCAGAGACCGATAGCGCACAAGTAGAGTG 133 ||||||| | |||||||||||| || || | |||| |||| ||||||| || Sbjct 3588 TAAATTTTATATAAAGCTAAATAAAACATG--CAAA-ACCGGTAGCATACAAGTACCATG 3644 Query 134 ATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGG 193 | ||||||||||||| |||||| ||| |||||| ||||| | |||||||||| ||| Sbjct 3645 AGGGAAAGATGAAAAGAACTTTGAAAAAAGAGTT-AAAAGTGCTTGAAATTGTTAAAAAA 3703 Query 194 GAAGCGCTT 202 ||||| || Sbjct 3704 AAAGCGTTT 3712 Score = 75.2 bits (82), Expect = 5e-11 Identities = 58/69 (84%), Gaps = 0/69 (0%) Strand=Plus/Plus Query 397 GTTGTAAGCGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTG 456 ||| ||| | ||||||||| |||||||||||||||||||||||| | ||| |||||| Sbjct 4039 GTTTTAAATGTCCCGTCTTGAAACACGGACCAAGGAGTCTAACATATGTGCAAGTGTTAA 4098 Query 457 GGTGTCAAA 465 |||| |||| Sbjct 4099 GGTGCCAAA 4107 >seq161 Length=187407 Score = 122 bits (134), Expect = 4e-25 Identities = 123/160 (77%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| ||||||||||||| | || ||| |||||| | | ||||| ||||||| Sbjct 170692 GAGTCGGGTTGCTTGGGAATGCAGCCCAAAGCGGGTGGTAAACTCCATCTAAGGCTAAAT 170633 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 | ||| ||||||||||| ||||||| || | ||||| ||||||| |||||| | Sbjct 170632 ACCGGCACGAGACCGATAGTCGACAAGTACCGTAAGGGAAAGTTGAAAAGAACTTTGAAG 170573 Query 160 AGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| || || ||||||| ||| | ||| || || Sbjct 170572 AGAGAGTTCAAGAGGGCGTGAAACCGTTAAGAGGTAAACG 170533 Score = 120 bits (132), Expect = 1e-24 Identities = 80/89 (90%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 169790 GGACCCGAAAGATGGTGAACTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGA 169731 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCG 657 || || |||||| ||| ||||||||||| Sbjct 169730 GGTCCGTAGCGGTCCTGACGTGCAAATCG 169702 >seq197 Length=772719 Score = 118 bits (130), Expect = 4e-24 Identities = 95/115 (83%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 |||||| ||||||||||||||||||||| ||| || ||||||||||||||||||||| Sbjct 312823 GGACCCAAAAGATGGTGAACTATGCCTGGGCAGGACGAGGCCAGAGGAAACTCTGGTGGA 312882 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || || |||||| || ||||||||||| || || | |||||||||||| || Sbjct 312883 GGTCCGTAGCGGTCTTGACGTGCAAATCGGTCATCTGACCTGGGTATAGGGGTGA 312937 >seq9618 Length=9490 Score = 105 bits (116), Expect = 3e-20 Identities = 88/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 576 AAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGC 635 ||||||||||||||||||||| ||||||||||||||||||||||||||||||| | Sbjct 1798 AAAGATGGTGAACTATGCCTGGGCAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGTCCAT 1857 Query 636 AGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||| | ||| | ||||||||| || || | || || ||| ||||| Sbjct 1858 AGCGATCCTGACATGCAAATCGGTCATCTGACCTGTGTGTAGAGGCGA 1905 >seq9170 Length=18211 Score = 105 bits (116), Expect = 3e-20 Identities = 88/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 576 AAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGC 635 |||||||||||| |||||||| |||| |||||||||||||||||||||||||| | Sbjct 9474 AAAGATGGTGAATTATGCCTGGGCAGGGCGAAGCCAGAGGAAACTCTGGTGGAGGTCCAT 9533 Query 636 AGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||| | ||| | ||||||||| ||||| | ||||| ||| ||||| Sbjct 9534 AGCGATCCTGACATGCAAATCGGTCGTCTGACCTGGGTGTAGAGGCGA 9581 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2078878594000