Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq4813 201 2e-49 seq7105 86.0 1e-14 >seq4813 Length=31911 Score = 201 bits (222), Expect = 2e-49 Identities = 257/350 (73%), Gaps = 13/350 (4%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| ||| |||||| | ||| | || || ||||||| ||||||||| Sbjct 1512 GCATCTTCACGAATATTGTTATTTCATCAAGTTTTTTTTTAAGACAGTATTCAAATCGTT 1453 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1452 ACATCTTTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 1393 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCC 186 ||||||| |||||||||||||| | |||| | | | || | | || | Sbjct 1392 TAGTTACAGCCGCCGTTTACTGAAGATTAA----AAAG--TAAAT--ATTTTAC----CT 1345 Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246 || | | | |||||| |||||| ||||||||| |||||| | | | ||||| | Sbjct 1344 TTTTTATCATACAGCACTGGGCAGATGTCAGCTCCCTTACATCATTATTATATTTAGCGG 1285 Query 247 AAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCATAGACAG 306 |||||||||||||| |||||||||| ||| | | | |||| | | |||| | Sbjct 1284 GAACCTGTGTTTTTGATAAACAGTCGTTTGAATC-ACTTTCTGATATCCTTAATAGTAGG 1226 Query 307 GCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAA 356 || | ||||||||||||||| | | | ||||| |||||||||| || Sbjct 1225 ACATTCTTTCTCCCTAAGTTACAGAATAAATTTGCTTAGTTCCTTAAAAA 1176 Score = 201 bits (222), Expect = 2e-49 Identities = 257/350 (73%), Gaps = 13/350 (4%) Strand=Plus/Plus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| ||| |||||| | ||| | || || ||||||| ||||||||| Sbjct 25541 GCATCTTCACGAATATTGTTATTTCATCAAGTTTTTTTTTAAGACAGTATTCAAATCGTT 25600 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 25601 ACATCTTTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 25660 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGATCC 186 ||||||| |||||||||||||| | |||| | | | || | | || | Sbjct 25661 TAGTTACAGCCGCCGTTTACTGAAGATTAA----AAAG--TAAAT--ATTTTAC----CT 25708 Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246 || | | | |||||| |||||| ||||||||| |||||| | | | ||||| | Sbjct 25709 TTTTTATCATACAGCACTGGGCAGATGTCAGCTCCCTTACATCATTATTATATTTAGCGG 25768 Query 247 AAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCATAGACAG 306 |||||||||||||| |||||||||| ||| | | | |||| | | |||| | Sbjct 25769 GAACCTGTGTTTTTGATAAACAGTCGTTTGAATC-ACTTTCTGATATCCTTAATAGTAGG 25827 Query 307 GCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAA 356 || | ||||||||||||||| | | | ||||| |||||||||| || Sbjct 25828 ACATTCTTTCTCCCTAAGTTACAGAATAAATTTGCTTAGTTCCTTAAAAA 25877 >seq7105 Length=15349 Score = 86.0 bits (94), Expect = 1e-14 Identities = 86/112 (77%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 35 GAGTCTATTGTTGAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGGAACTTACC 94 ||||||||| | |||| || | ||||||| || ||| ||| || |||| |||||| Sbjct 11076 GAGTCTATTCTATCGACAATGAGGTAGTCGTTACACCGTTCATGCAGGACGGAGCTTACC 11017 Query 95 CGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTAC 146 || ||||||||| |||||||||||||||||| | | ||||||||| || Sbjct 11016 CGCCAAGGAATTATGCTACCTTAGGACCGTTACGTGTTCAGCCGCCGTTAAC 10965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1061844577280