Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq11759 297 3e-78 seq17630 176 7e-42 seq6766 167 4e-39 seq2890 167 4e-39 seq649 167 4e-39 seq491 167 4e-39 seq317 167 4e-39 seq152 167 4e-39 seq37139 161 2e-37 seq20066 134 2e-29 seq1008 116 6e-24 seq5343 102 1e-19 seq576 95.1 2e-17 >seq11759 Length=7209 Score = 297 bits (328), Expect = 3e-78 Identities = 220/257 (86%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||| | ||| | | ||| |||||||||||||| ||||||||||||||||||||||||||| Sbjct 2377 ACTTGTTGGATACATCATTGTAGCGCGCGTGCAGCCCAGAACATCTAAGGGCATCACAGA 2318 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||||| | | | || | | ||||| ||||||||| | Sbjct 2317 CCTGTTATTGCCTCAAACTTCCTTGCGTTAGACACGCAAAGTCCTTCTAAGAAGTAATTT 2258 Query 122 ACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 181 | ||| | ||| | |||||||||||||||||||||||||||||| ||||||||| Sbjct 2257 AAAAACAAAAGTTTTTAACCCTATTTAGCAGGTTAAGGTCTCGTTCGTTAACGGAATTAA 2198 Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 2197 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATTAAGAA 2138 Query 242 AGAGCTATCAATCTGTC 258 |||||| |||||||||| Sbjct 2137 AGAGCTGTCAATCTGTC 2121 >seq17630 Length=3150 Score = 176 bits (194), Expect = 7e-42 Identities = 109/117 (93%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||||||| || |||||||||||||||||||||||||||||||||| |||||||| Sbjct 352 CTATTTAGCAGGCCAAAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 411 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||| ||| |||||||||||||||| |||||||||| Sbjct 412 ACTAAGAACGGCCATGCACCACCAACCACCGAATCAAGAAAGAGCTTTCAATCTGTC 468 Score = 93.3 bits (102), Expect = 7e-17 Identities = 63/71 (89%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || |||||| |||||||| |||||||||| | |||||||||||||||||||| Sbjct 147 ACTCGCTGAAACCGTCATTGTAGCGCACGTGCGGCCCCGGACATCTAAGGGCATCACAGA 206 Query 62 CCTGTTATTGC 72 ||||||||||| Sbjct 207 CCTGTTATTGC 217 >seq6766 Length=16663 Score = 167 bits (184), Expect = 4e-39 Identities = 107/117 (91%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | |||||||||||||||||||||||||||||||||| |||||||| Sbjct 2842 CTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 2783 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||| Sbjct 2782 ACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTATCGATCTGTC 2726 >seq2890 Length=172774 Score = 167 bits (184), Expect = 4e-39 Identities = 107/117 (91%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | |||||||||||||||||||||||||||||||||| |||||||| Sbjct 123303 CTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 123244 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||| Sbjct 123243 ACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTATCGATCTGTC 123187 >seq649 Length=1012230 Score = 167 bits (184), Expect = 4e-39 Identities = 107/117 (91%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | |||||||||||||||||||||||||||||||||| |||||||| Sbjct 815668 CTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 815727 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||| Sbjct 815728 ACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTATCGATCTGTC 815784 >seq491 Length=992880 Score = 167 bits (184), Expect = 4e-39 Identities = 107/117 (91%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | |||||||||||||||||||||||||||||||||| |||||||| Sbjct 200752 CTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 200811 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||| Sbjct 200812 ACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTATCGATCTGTC 200868 >seq317 Length=6916597 Score = 167 bits (184), Expect = 4e-39 Identities = 107/117 (91%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | |||||||||||||||||||||||||||||||||| |||||||| Sbjct 3601226 CTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 3601285 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||| Sbjct 3601286 ACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTATCGATCTGTC 3601342 >seq152 Length=832475 Score = 167 bits (184), Expect = 4e-39 Identities = 107/117 (91%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | |||||||||||||||||||||||||||||||||| |||||||| Sbjct 782169 CTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 782228 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||| Sbjct 782229 ACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTATCGATCTGTC 782285 >seq37139 Length=1354 Score = 161 bits (178), Expect = 2e-37 Identities = 106/117 (91%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | |||||||||||||||||||||||||||||||||| |||||||| Sbjct 1138 CTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 1079 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 | |||||||||||||||||||||||||| |||||| ||||||||||||| ||||||| Sbjct 1078 AGTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTATCGATCTGTC 1022 >seq20066 Length=2543 Score = 134 bits (148), Expect = 2e-29 Identities = 86/94 (91%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | |||||||||||||||||||||||||||||||||| |||||||| Sbjct 217 CTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 276 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAAT 235 |||||||||||||||||||||||||||| ||||| Sbjct 277 ACTAAGAACGGCCATGCACCACCACCCACAGAAT 310 >seq1008 Length=272564 Score = 116 bits (128), Expect = 6e-24 Identities = 96/116 (83%), Gaps = 1/116 (1%) Strand=Plus/Minus Query 143 TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAA 202 || |||||| | | | || ||| ||||| ||||||||| ||||||||||||||||||| Sbjct 136896 TAATTAGCATGCCAGAGCCTTGTTGGTTATTGGAATTAACTAGACAAATCACTCCACCAA 136837 Query 203 CTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||| ||| |||||||||||| |||| |||||| | |||||||||| ||||||| Sbjct 136836 CTAAAAACAACCATGCACCACC-CCCACAGAATCGAAAAAGAGCTATTGATCTGTC 136782 >seq5343 Length=25585 Score = 102 bits (112), Expect = 1e-19 Identities = 62/66 (94%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 193 ACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAA 252 ||||| |||||||||||||||| |||||||||||||| |||||| ||||||||||||||| Sbjct 23103 ACTCCGCCAACTAAGAACGGCCGTGCACCACCACCCACAGAATCGAGAAAGAGCTATCAA 23044 Query 253 TCTGTC 258 |||||| Sbjct 23043 TCTGTC 23038 >seq576 Length=740706 Score = 95.1 bits (104), Expect = 2e-17 Identities = 63/70 (90%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 189 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTA 248 |||| |||||| ||||||||||||||||||||||||||||| ||||| ||||||||||| Sbjct 499537 AATCGCTCCACTAACTAAGAACGGCCATGCACCACCACCCACAGAATTGAGAAAGAGCTA 499478 Query 249 TCAATCTGTC 258 | ||||||| Sbjct 499477 CCGATCTGTC 499468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796396450680