Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016-
01-22] 52,280 sequences; 1,673,876,332 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq11759 297 3e-78
seq17630 176 7e-42
seq6766 167 4e-39
seq2890 167 4e-39
seq649 167 4e-39
seq491 167 4e-39
seq317 167 4e-39
seq152 167 4e-39
seq37139 161 2e-37
seq20066 134 2e-29
seq1008 116 6e-24
seq5343 102 1e-19
seq576 95.1 2e-17
>seq11759
Length=7209
Score = 297 bits (328), Expect = 3e-78
Identities = 220/257 (86%), Gaps = 0/257 (0%)
Strand=Plus/Minus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||| | ||| | | ||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 2377 ACTTGTTGGATACATCATTGTAGCGCGCGTGCAGCCCAGAACATCTAAGGGCATCACAGA 2318
Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121
|||||||||||||||||||||| | | | || | | ||||| ||||||||| |
Sbjct 2317 CCTGTTATTGCCTCAAACTTCCTTGCGTTAGACACGCAAAGTCCTTCTAAGAAGTAATTT 2258
Query 122 ACCAACCATAGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAA 181
| ||| | ||| | |||||||||||||||||||||||||||||| |||||||||
Sbjct 2257 AAAAACAAAAGTTTTTAACCCTATTTAGCAGGTTAAGGTCTCGTTCGTTAACGGAATTAA 2198
Query 182 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAA 241
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2197 CCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATTAAGAA 2138
Query 242 AGAGCTATCAATCTGTC 258
|||||| ||||||||||
Sbjct 2137 AGAGCTGTCAATCTGTC 2121
>seq17630
Length=3150
Score = 176 bits (194), Expect = 7e-42
Identities = 109/117 (93%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
|||||||||||| || |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 352 CTATTTAGCAGGCCAAAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 411
Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
|||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||
Sbjct 412 ACTAAGAACGGCCATGCACCACCAACCACCGAATCAAGAAAGAGCTTTCAATCTGTC 468
Score = 93.3 bits (102), Expect = 7e-17
Identities = 63/71 (89%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61
||||| || |||||| |||||||| |||||||||| | ||||||||||||||||||||
Sbjct 147 ACTCGCTGAAACCGTCATTGTAGCGCACGTGCGGCCCCGGACATCTAAGGGCATCACAGA 206
Query 62 CCTGTTATTGC 72
|||||||||||
Sbjct 207 CCTGTTATTGC 217
>seq6766
Length=16663
Score = 167 bits (184), Expect = 4e-39
Identities = 107/117 (91%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
||| |||||| | | |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2842 CTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 2783
Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
|||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||
Sbjct 2782 ACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTATCGATCTGTC 2726
>seq2890
Length=172774
Score = 167 bits (184), Expect = 4e-39
Identities = 107/117 (91%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
||| |||||| | | |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 123303 CTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 123244
Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
|||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||
Sbjct 123243 ACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTATCGATCTGTC 123187
>seq649
Length=1012230
Score = 167 bits (184), Expect = 4e-39
Identities = 107/117 (91%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
||| |||||| | | |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 815668 CTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 815727
Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
|||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||
Sbjct 815728 ACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTATCGATCTGTC 815784
>seq491
Length=992880
Score = 167 bits (184), Expect = 4e-39
Identities = 107/117 (91%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
||| |||||| | | |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 200752 CTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 200811
Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
|||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||
Sbjct 200812 ACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTATCGATCTGTC 200868
>seq317
Length=6916597
Score = 167 bits (184), Expect = 4e-39
Identities = 107/117 (91%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
||| |||||| | | |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 3601226 CTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 3601285
Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
|||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||
Sbjct 3601286 ACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTATCGATCTGTC 3601342
>seq152
Length=832475
Score = 167 bits (184), Expect = 4e-39
Identities = 107/117 (91%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
||| |||||| | | |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 782169 CTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 782228
Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
|||||||||||||||||||||||||||| |||||| ||||||||||||| |||||||
Sbjct 782229 ACTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTATCGATCTGTC 782285
>seq37139
Length=1354
Score = 161 bits (178), Expect = 2e-37
Identities = 106/117 (91%), Gaps = 0/117 (0%)
Strand=Plus/Minus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
||| |||||| | | |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1138 CTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 1079
Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
| |||||||||||||||||||||||||| |||||| ||||||||||||| |||||||
Sbjct 1078 AGTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTATCGATCTGTC 1022
>seq20066
Length=2543
Score = 134 bits (148), Expect = 2e-29
Identities = 86/94 (91%), Gaps = 0/94 (0%)
Strand=Plus/Plus
Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201
||| |||||| | | |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 217 CTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTCCACCA 276
Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAAT 235
|||||||||||||||||||||||||||| |||||
Sbjct 277 ACTAAGAACGGCCATGCACCACCACCCACAGAAT 310
>seq1008
Length=272564
Score = 116 bits (128), Expect = 6e-24
Identities = 96/116 (83%), Gaps = 1/116 (1%)
Strand=Plus/Minus
Query 143 TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAA 202
|| |||||| | | | || ||| ||||| ||||||||| |||||||||||||||||||
Sbjct 136896 TAATTAGCATGCCAGAGCCTTGTTGGTTATTGGAATTAACTAGACAAATCACTCCACCAA 136837
Query 203 CTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
|||| ||| |||||||||||| |||| |||||| | |||||||||| |||||||
Sbjct 136836 CTAAAAACAACCATGCACCACC-CCCACAGAATCGAAAAAGAGCTATTGATCTGTC 136782
>seq5343
Length=25585
Score = 102 bits (112), Expect = 1e-19
Identities = 62/66 (94%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 193 ACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAA 252
||||| |||||||||||||||| |||||||||||||| |||||| |||||||||||||||
Sbjct 23103 ACTCCGCCAACTAAGAACGGCCGTGCACCACCACCCACAGAATCGAGAAAGAGCTATCAA 23044
Query 253 TCTGTC 258
||||||
Sbjct 23043 TCTGTC 23038
>seq576
Length=740706
Score = 95.1 bits (104), Expect = 2e-17
Identities = 63/70 (90%), Gaps = 0/70 (0%)
Strand=Plus/Minus
Query 189 AATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTA 248
|||| |||||| ||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 499537 AATCGCTCCACTAACTAAGAACGGCCATGCACCACCACCCACAGAATTGAGAAAGAGCTA 499478
Query 249 TCAATCTGTC 258
| |||||||
Sbjct 499477 CCGATCTGTC 499468
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796396450680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |