Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq11759 352 5e-95 seq404 340 3e-91 seq49 340 3e-91 seq161 334 1e-89 seq1519 316 3e-84 seq1717 118 2e-24 seq514 73.4 7e-11 >seq11759 Length=7209 Score = 352 bits (390), Expect = 5e-95 Identities = 234/260 (90%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 33 ATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATT 92 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 6555 ATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATT 6496 Query 93 AGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACA 152 | ||||||||||||| || ||| || |||||| || ||||||||||||||||||| Sbjct 6495 GGCGGGTGAACAATCCGACACTTTGAGACTTCTGCGTCCCAATGATAGGAAGAGCCGACA 6436 Query 153 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 212 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 6435 TCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCT 6376 Query 213 GTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCC 272 ||||||||||||||| |||||||||| |||||| || |||||||||||||||||| Sbjct 6375 GTGGTAACTTTTCTGACACCTCTAGCTGAAAATTTTTCAGGCCTAAAGGATCGATAGGCC 6316 Query 273 ACACTTTCATGGTTTGTATT 292 | |||||| ||||||||| Sbjct 6315 ATGCTTTCACAGTTTGTATT 6296 >seq404 Length=2356612 Score = 340 bits (376), Expect = 3e-91 Identities = 233/263 (89%), Gaps = 0/263 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 308360 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 308419 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| Sbjct 308420 TTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGA 308479 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 308480 CATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCC 308539 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 ||||||||||||||||| ||||| || | ||| | | | |||||||| ||| Sbjct 308540 CTGTGGTAACTTTTCTGAAACCTCCTGCTTAAAACCCAAAAAGTCAGAAGGATCGTGAGG 308599 Query 271 CCACACTTTCATGGTTTGTATTC 293 || | |||||| ||| ||||||| Sbjct 308600 CCCCGCTTTCACGGTCTGTATTC 308622 >seq49 Length=351248 Score = 340 bits (376), Expect = 3e-91 Identities = 236/268 (88%), Gaps = 5/268 (2%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 345875 TCATTAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 345934 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||||||| ||||||||| || | | |||| |||||||| Sbjct 345935 TTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCGTCACAACGCTAGGGAGAGCCGA 345994 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 345995 CATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCC 346054 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGA-----GGGACTAAAGGATCG 265 ||||||||||||||||| ||||||| || ||||| | ||| | ||||||||| Sbjct 346055 CTGTGGTAACTTTTCTGACACCTCTTGCTTCAAACTCCGAAAATCAATTCAAAAGGATCG 346114 Query 266 ATAGGCCACACTTTCATGGTTTGTATTC 293 ||||||||| |||||| ||| ||||||| Sbjct 346115 ATAGGCCACGCTTTCACGGTCTGTATTC 346142 >seq161 Length=187407 Score = 334 bits (370), Expect = 1e-89 Identities = 232/263 (88%), Gaps = 0/263 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 185131 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 185190 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| Sbjct 185191 TTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGA 185250 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 ||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| Sbjct 185251 CATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCC 185310 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 ||||||||| ||||||| |||||| || | ||| | | | |||||||| ||| Sbjct 185311 CTGTGGTAATTTTTCTGACACCTCCTGCTTAAAACCCAAAAAGTCAGAAGGATCGTGAGG 185370 Query 271 CCACACTTTCATGGTTTGTATTC 293 || | |||||| ||| ||||||| Sbjct 185371 CCCCGCTTTCACGGTCTGTATTC 185393 >seq1519 Length=481154 Score = 316 bits (350), Expect = 3e-84 Identities = 228/263 (87%), Gaps = 0/263 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 679 TCATCAGTAGGGTAAAACTAACCTGTCTCACAACGGTCTAAACCCAGCTCACGTTCCCTA 620 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||| Sbjct 619 TTAGTGGGTGAACAATCCAACGCTTGGTGAATTTTGCTTCACAATGATAGGAAGAGCCGA 560 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 |||| |||||||||||||| | ||||||||||||||||||| |||||||||||||||||| Sbjct 559 CATCAAAGGATCAAAAAGCGATGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCC 500 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 ||||||||||||||||| |||||| || | ||| | | | |||||||| ||| Sbjct 499 CTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAAGTCAGAAGGATCGTGAGG 440 Query 271 CCACACTTTCATGGTTTGTATTC 293 || |||||| ||| ||||||| Sbjct 439 CCCTGCTTTCACGGTCTGTATTC 417 >seq1717 Length=201285 Score = 118 bits (130), Expect = 2e-24 Identities = 74/80 (93%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 32 CATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTAT 91 |||||| || ||||||||||||||||| ||||||| ||||||| |||||||||| ||||| Sbjct 178990 CATCAGAAGAGTAAAACTAACCTGTCTTATGACGGCCTAAACCTAGCTCACGTTTCCTAT 178931 Query 92 TAGTGGGTGAACAATCCAAC 111 |||||||||||||||||||| Sbjct 178930 TAGTGGGTGAACAATCCAAC 178911 >seq514 Length=942039 Score = 73.4 bits (80), Expect = 7e-11 Identities = 48/53 (91%), Gaps = 0/53 (0%) Strand=Plus/Plus Query 182 AACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTC 234 || |||||||||||||||||||||||||||| | |||||||||||| || ||| Sbjct 864611 AAAGCTTGGCTGCCACAAGCCAGTTATCCCTATAGTAACTTTTCTGACATCTC 864663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 853953319680