Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq4813 104 3e-20 seq7105 78.8 1e-12 >seq4813 Length=31911 Score = 104 bits (114), Expect = 3e-20 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| | | ||| ||| |||||||||| ||| | |||||| || Sbjct 1541 GGGTCTTTCTGTCCGAGTGTGGGGAATTCGCATCTTCACGAATATTGTTATTTCATCAAG 1482 Query 85 CTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGA 144 | || |||||| |||| | ||||||||||||||||||||||||| Sbjct 1481 TTTTTTTTTAAGACAGTATTCAAATCGTTACATCTTTCGTGCAGGTCGGAACTTACCCGA 1422 Query 145 CAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||||||||||||||||||||| Sbjct 1421 CAAGGAATTTCGCTACCTTAGGACCGTTA 1393 Score = 104 bits (114), Expect = 3e-20 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 |||||||| |||| | | ||| ||| |||||||||| ||| | |||||| || Sbjct 25512 GGGTCTTTCTGTCCGAGTGTGGGGAATTCGCATCTTCACGAATATTGTTATTTCATCAAG 25571 Query 85 CTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGA 144 | || |||||| |||| | ||||||||||||||||||||||||| Sbjct 25572 TTTTTTTTTAAGACAGTATTCAAATCGTTACATCTTTCGTGCAGGTCGGAACTTACCCGA 25631 Query 145 CAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||||||||||||||||||||| Sbjct 25632 CAAGGAATTTCGCTACCTTAGGACCGTTA 25660 >seq7105 Length=15349 Score = 78.8 bits (86), Expect = 1e-12 Identities = 54/61 (89%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 |||||| ||| |||||| |||| |||||||| ||||||||| ||||||||||||||||| Sbjct 11045 TACACCGTTCATGCAGGACGGAGCTTACCCGCCAAGGAATTATGCTACCTTAGGACCGTT 10986 Query 173 A 173 | Sbjct 10985 A 10985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546922863720