Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq4813 82.4 2e-13 >seq4813 Length=31911 Score = 82.4 bits (90), Expect = 2e-13 Identities = 115/160 (72%), Gaps = 1/160 (1%) Strand=Plus/Minus Query 241 ATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGC 300 ||||||||||| | |||| | | |||||||||||||||||||| || ||| ||||| Sbjct 778 ATTATCGGCGCTAATATACTTAAATAATGAGCTATTACGCACTCTTTAAAAGATAGCTGC 719 Query 301 TTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCAC 360 || |||| || | | ||||||| | | || |||||| | ||| | | | | Sbjct 718 CTCTAAGCTTACTTTTTATTTGTCTATGTATAAAAACTTCCTTT-CAACTAAATAAATAT 660 Query 361 TTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 ||| | ||||| | ||| |||||| ||||||||||||| Sbjct 659 TTAAGAACCTTATTTAATGGTCTGGGTTGTTTCCCTCTCG 620 Score = 82.4 bits (90), Expect = 2e-13 Identities = 115/160 (72%), Gaps = 1/160 (1%) Strand=Plus/Plus Query 241 ATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGC 300 ||||||||||| | |||| | | |||||||||||||||||||| || ||| ||||| Sbjct 26275 ATTATCGGCGCTAATATACTTAAATAATGAGCTATTACGCACTCTTTAAAAGATAGCTGC 26334 Query 301 TTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCAC 360 || |||| || | | ||||||| | | || |||||| | ||| | | | | Sbjct 26335 CTCTAAGCTTACTTTTTATTTGTCTATGTATAAAAACTTCCTTT-CAACTAAATAAATAT 26393 Query 361 TTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 ||| | ||||| | ||| |||||| ||||||||||||| Sbjct 26394 TTAAGAACCTTATTTAATGGTCTGGGTTGTTTCCCTCTCG 26433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1176984350720