Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq11759 109 6e-22 seq17630 105 7e-21 >seq11759 Length=7209 Score = 109 bits (120), Expect = 6e-22 Identities = 140/189 (74%), Gaps = 7/189 (4%) Strand=Plus/Plus Query 6 CAGGACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGC---CTTTGCTCGAATACA 62 ||||| ||||||||||| |||||||||| ||| |||||||| | || | |||||| Sbjct 1624 CAGGATTTTTACTTTGAGAAAATTAGAGTGTTTCAAGCAGGCTAACGTT--TTGAATACT 1681 Query 63 TTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCC 122 | |||||||||||| ||||||| | | ||||| || | ||||| || || | Sbjct 1682 GCAGCATGGAATAATAAAATAGGATTTTAG-TTCTACGTTATTGGTTT-TAAGAACTAAA 1739 Query 123 GTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTT 182 ||||||| ||| || ||| ||||| | ||||| || ||||| ||||||||||||| Sbjct 1740 TTAATGATTGATAGGGGCAGTTGGGGGCATTTGTATTTAACTGTCAGAGGTGAAATTCTT 1799 Query 183 GGATTTATT 191 ||||| || Sbjct 1800 AGATTTGTT 1808 >seq17630 Length=3150 Score = 105 bits (116), Expect = 7e-21 Identities = 133/179 (74%), Gaps = 4/179 (2%) Strand=Plus/Minus Query 10 ACTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTT--TGCTCGAATACATTACC 67 || ||||||||||| ||||| ||| | |||||||||||| | || ||| | | | Sbjct 963 ACGTTTACTTTGAACAAATTTGAGTGCTCAAAGCAGGCCATAGAGCCTGAAAATTCTTGC 904 Query 68 ATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAAT 127 |||||||||| |||||||| | |||||||||||||| ||||| | ||| | ||||| Sbjct 903 ATGGAATAATGAAATAGGAC-TTCGGTTCTATTTTGTTGGTTT-TCGGATCCGAAGTAAT 846 Query 128 GATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGAT 186 | | || | ||| || |||||| | |||| ||| | ||||||||||||||||| Sbjct 845 GGTTAAGAGGGACAGACGGGGGCATTTGTATGGCGGTGTTAGAGGTGAAATTCTTGGAT 787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511740691200