Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq4813 127 3e-27 >seq4813 Length=31911 Score = 127 bits (140), Expect = 3e-27 Identities = 147/197 (75%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 80 AACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCA 139 || || | ||||||| |||| | || |||| ||||||||| | | | | ||| Sbjct 2114 AATTGATACACCAGAAGTTTAATTTTTTCGCTCCTTTCGTACTAAAAAAAATTTTTTTCA 2055 Query 140 AATTTCC-TACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGC 198 | ||| || ||||| ||||| |||||||||||||| ||||||||||||||||||| Sbjct 2054 TAATTCTATAAACCCACACTGGATATGGACCGAACTGTCTTGCGACGTTCTGAACCCAGC 1995 Query 199 TCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGAT 258 || ||| || ||||||| ||||||||| | ||||||| || ||| | || ||||| Sbjct 1994 TCACGTACCACTTTAATAGGCGAACAGACTAACCCTTAAAACACACTACTGCTTTAGGAT 1935 Query 259 GAGACGAGCCGACATCG 275 | || |||||||||||| Sbjct 1934 GTGATGAGCCGACATCG 1918 Score = 127 bits (140), Expect = 3e-27 Identities = 147/197 (75%), Gaps = 1/197 (1%) Strand=Plus/Plus Query 80 AACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCA 139 || || | ||||||| |||| | || |||| ||||||||| | | | | ||| Sbjct 24939 AATTGATACACCAGAAGTTTAATTTTTTCGCTCCTTTCGTACTAAAAAAAATTTTTTTCA 24998 Query 140 AATTTCC-TACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGC 198 | ||| || ||||| ||||| |||||||||||||| ||||||||||||||||||| Sbjct 24999 TAATTCTATAAACCCACACTGGATATGGACCGAACTGTCTTGCGACGTTCTGAACCCAGC 25058 Query 199 TCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGAT 258 || ||| || ||||||| ||||||||| | ||||||| || ||| | || ||||| Sbjct 25059 TCACGTACCACTTTAATAGGCGAACAGACTAACCCTTAAAACACACTACTGCTTTAGGAT 25118 Query 259 GAGACGAGCCGACATCG 275 | || |||||||||||| Sbjct 25119 GTGATGAGCCGACATCG 25135 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780404554080