Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq4813 91.5 4e-16 >seq4813 Length=31911 Score = 91.5 bits (100), Expect = 4e-16 Identities = 81/99 (82%), Gaps = 2/99 (2%) Strand=Plus/Plus Query 398 AAGCCCCGGCTAA-CTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCC 456 |||| |||| || || |||||||||||||||||||||||| | ||||||||||| | Sbjct 28339 AAGCATCGGCAAATCTTCGTGCCAGCAGCCGCGGTAATACGAGAGATGCTAGCGTTATTC 28398 Query 457 GGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTT 495 |||||| | |||||||||| ||| ||||| ||||| || Sbjct 28399 AGAATTA-TTGGGCGTAAAGTGTGTGTAGGCGGTTTATT 28436 Score = 91.5 bits (100), Expect = 4e-16 Identities = 81/99 (82%), Gaps = 2/99 (2%) Strand=Plus/Minus Query 398 AAGCCCCGGCTAA-CTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCC 456 |||| |||| || || |||||||||||||||||||||||| | ||||||||||| | Sbjct 30625 AAGCATCGGCAAATCTTCGTGCCAGCAGCCGCGGTAATACGAGAGATGCTAGCGTTATTC 30566 Query 457 GGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTT 495 |||||| | |||||||||| ||| ||||| ||||| || Sbjct 30565 AGAATTA-TTGGGCGTAAAGTGTGTGTAGGCGGTTTATT 30528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1496817054720