Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq11759 259 9e-67 seq17630 167 4e-39 seq49 132 9e-29 seq161 122 2e-25 >seq11759 Length=7209 Score = 259 bits (286), Expect = 9e-67 Identities = 213/258 (83%), Gaps = 1/258 (0%) Strand=Plus/Plus Query 72 CTTCTTAGAGGGACTAT-CGGCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 ||||||||| ||||| | || || | | | |||||||||||||||||||||||||||| Sbjct 2264 CTTCTTAGAAGGACTTTGCGTGTCTAACGCAAGGAAGTTTGAGGCAATAACAGGTCTGTG 2323 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCA 190 ||||||||||||||||||||| |||||||||||||| ||| | ||||| |||| || | Sbjct 2324 ATGCCCTTAGATGTTCTGGGCTGCACGCGCGCTACAATGATGTATCCAACAAGTTTATAA 2383 Query 191 CCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 ||||||| || | | | ||||||||| | || | | ||| |||||||||| |||| Sbjct 2384 CCTTGGCTGGTAAGCTTAGGTAATCTTTTGAATGTGCATTGTGATGGGGATAGATTATTG 2443 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||||| |||| ||||||||||||||||||||||| ||||||||| ||| ||||| Sbjct 2444 TAATTATTAATCTTTAACGAGGAATGCCTAGTAAGCGCAAGTCATCAGCTTGCGCTGATT 2503 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 2504 ACGTCCCTGCCCTTTGTA 2521 >seq17630 Length=3150 Score = 167 bits (184), Expect = 4e-39 Identities = 196/260 (75%), Gaps = 5/260 (2%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGCTCAA--GCCGATGGAAGTTTGAGGCAATAACAGGTCTGT 129 |||||||||||||| | |||| | | || ||| | ||| ||||||||||||||| Sbjct 259 CTTCTTAGAGGGACAAGCGGCGAGACAGTCGCACGAAAAT-GAG-CAATAACAGGTCTGT 202 Query 130 GATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATC 189 ||||||||||||||| | |||||||||| |||||||| |||| | || |||||| Sbjct 201 GATGCCCTTAGATGTCCGGGGCCGCACGTGCGCTACAATGACGGTTTCAGCGAGTTTGGA 142 Query 190 ACCTTGGCCGGA-AGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCAT 248 | | ||||| || ||| |||| || || | | | | |||||| ||||| | | | Sbjct 141 ATCCTGGCCTGAGAGGGTTGGGCAAACTGTATCATCACCGTCGTGACTGGGATCGGGGCT 82 Query 249 TGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGA 308 ||||||| || | | | |||||||||| ||| ||||| || ||||| ||| ||| ||| Sbjct 81 TGCAATTGTTCCCCGTGAACGAGGAATTCCTGGTAAGTGCAAGTCATAAGCTTGCGCTGA 22 Query 309 TTACGTCCCTGCCCTTTGTA 328 |||||||||||||||||||| Sbjct 21 TTACGTCCCTGCCCTTTGTA 2 >seq49 Length=351248 Score = 132 bits (146), Expect = 9e-29 Identities = 149/198 (75%), Gaps = 1/198 (1%) Strand=Plus/Minus Query 132 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCAC 191 ||||||||||||| | |||||||||| |||||||| |||| | || |||||| | Sbjct 351248 TGCCCTTAGATGTCCGGGGCCGCACGTGCGCTACAATGACGGTTTCAGCGAGTTTGGAAT 351189 Query 192 CTTGGCCGGA-AGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTG 250 | ||||| || ||| |||| || || | | | | |||||| ||||| | | ||| Sbjct 351188 CCTGGCCTGAGAGGGTTGGGCAAACTGTATCATCACCGTCGTGACTGGGATCGGGGCTTG 351129 Query 251 CAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATT 310 ||||| || | | | |||||||||| ||| ||||| || ||||| ||| ||| ||||| Sbjct 351128 CAATTGTTCCCCGTGAACGAGGAATTCCTGGTAAGTGCAAGTCATAAGCTTGCGCTGATT 351069 Query 311 ACGTCCCTGCCCTTTGTA 328 |||||||||||||||||| Sbjct 351068 ACGTCCCTGCCCTTTGTA 351051 >seq161 Length=187407 Score = 122 bits (134), Expect = 2e-25 Identities = 129/170 (76%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 159 GCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTG 218 ||||||||||||| | || || || | ||| |||| |||| |||||| | Sbjct 173660 GCGCTACACTGACTGGCTCAGCGTGTGTCTACCCTACGCCGACAGGTGCGGGTAACCCGT 173601 Query 219 TTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCC 278 | || | | ||||| ||||||| | | |||||||||||| | | | |||||||||| || Sbjct 173600 TGAACCCCATTCGTGATGGGGATCGGGGATTGCAATTATTCCCCATGAACGAGGAATTCC 173541 Query 279 TAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 |||||| ||| ||||| ||| ||||||||||| |||||||||||||||| Sbjct 173540 CAGTAAGTGCGGGTCATAAGCTCGCGTTGATTAAGTCCCTGCCCTTTGTA 173491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946704803840