Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq161 571 2e-160 seq49 497 3e-138 seq11759 480 3e-133 seq404 297 6e-78 seq514 214 6e-53 seq544 102 3e-19 >seq161 Length=187407 Score = 571 bits (632), Expect = 2e-160 Identities = 455/543 (84%), Gaps = 17/543 (3%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| | |||| ||||||| |||| |||| | ||||||||||||||||||| | Sbjct 185427 CTTCTGCTCCGCGGGAGGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACG 185486 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||| |||| ||| ||||||||| ||||||||||||||||| |||| | ||| || Sbjct 185487 GTTTGACAGGTGTACCGCCCCAGTCAAACTCCCCACCTGACGCTGTCCCCGGAGCGGGTC 185546 Query 127 G------GCCCGCGAAGGAC-CTTAACGCCAGAAAATGG------TCGGTGAAGACCAGT 173 | ||||||| || | ||| |||||| | |||| | || Sbjct 185547 GCGCCCGGCCCGCGCCGGGCGCTTGGAACCAGAAGCGAGAGCCCCTCGGGGCTCGCCCCC 185606 Query 174 TCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG--CCGA 231 |||| ||| | |||| |||||||||| || ||||||||||||||| ||| ||| Sbjct 185607 -CCGCCTCACCGGGCAAGTGAAAAAACGATCAGAGTAGTGGTATTTCACCGGCGGCCCGG 185665 Query 232 AACGGC-TCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAA 290 ||| ||||||||||||||| ||||||| ||| |||||| | | |||||||||||| Sbjct 185666 GCGGGCCTCCCACTTATTCTACGCCTCTCATGTCTCTTCACAGGGCCAGACTAGAGTCAA 185725 Query 291 GCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTT 350 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 185726 GCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTT 185785 Query 351 CGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAAT 410 ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 185786 CGCTAGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACTAAT 185845 Query 411 TAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGC 470 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 185846 TAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGC 185905 Query 471 GCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCA 530 |||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 185906 GCTTCATTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATCGCGTCA 185965 Query 531 ACA 533 ||| Sbjct 185966 ACA 185968 >seq49 Length=351248 Score = 497 bits (550), Expect = 3e-138 Identities = 331/367 (90%), Gaps = 11/367 (3%) Strand=Plus/Plus Query 175 CCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGC------ 228 ||| || | ||| |||| ||| |||| || | ||| ||||||||||| | ||| Sbjct 346419 CCGTTTTACTGAATAAGCAAAGAAACAATGACGGTGGTGGTATTTCATTGACGCTCGGTC 346478 Query 229 -CGAA--ACG--GCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTA 283 |||| || |||||||||||||||||||| ||| ||| |||||||||||||||| Sbjct 346479 CCGAAGGACTTTGCTCCCACTTATTCTACACCCGTCATGTCTCCTCACAAAGTCGGACTA 346538 Query 284 GAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCT 343 ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| Sbjct 346539 GAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTAATTTTGCCAAGCCCGTTCCCTTGGCT 346598 Query 344 GTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGT 403 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 346599 GTGGTTTCGCTAGATAGTAGATAGGGACAGCGGGAATCTCGTTAATCCATTCATGCGCGT 346658 Query 404 CACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTT 463 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 346659 CACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTT 346718 Query 464 TACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACAT 523 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 346719 TACCCGCGCTTGATTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACAT 346778 Query 524 TGCGTCA 530 ||||||| Sbjct 346779 TGCGTCA 346785 Score = 93.3 bits (102), Expect = 1e-16 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| ||| || || |||| || || |||| | |||| |||||||||||||| Sbjct 346176 CTTTTACTCCACGCCAGGTTTCCGTCCTGGCTGAGCTCACCTTGGGACACCTGCGTTACC 346235 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCA 117 ||| |||||||| ||||||||| |||||||||| ||||||| |||| ||| Sbjct 346236 ATTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGACATTGTCTTCA 346286 >seq11759 Length=7209 Score = 480 bits (532), Expect = 3e-133 Identities = 289/304 (95%), Gaps = 0/304 (0%) Strand=Plus/Minus Query 236 GCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA 295 |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct 5985 GCTCCCACTTATGCTACACCTTCTAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA 5926 Query 296 ACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 355 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 5925 ACAGGGTCTTCTTTCCCCGCTGATTGTTCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 5866 Query 356 GATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 415 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 5865 GATAGTAGATAGGGACAGTAGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGAT 5806 Query 416 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTG 475 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 5805 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTC 5746 Query 476 GTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 ||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||| | Sbjct 5745 ATTGAATTTCATCACATTGACATTCAGAGCACTGGGCAGAAATCACATTGTGTCAACACC 5686 Query 536 ACTT 539 | || Sbjct 5685 AATT 5682 Score = 131 bits (144), Expect = 5e-28 Identities = 95/110 (86%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| || ||| |||||||||||||| |||| |||||||||||||||||||| Sbjct 6261 CTTTTAGTCAACATAAGATTTCTGTTCTCATTGAGCTTGCCTTAGGACACCTGCGTTATT 6202 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATC 116 |||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 6201 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACTATGTCTTC 6152 >seq404 Length=2356612 Score = 297 bits (328), Expect = 6e-78 Identities = 187/202 (93%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 246 ATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTT 305 ||| || ||||||| ||| |||||| | | ||||||||||||||||||||||||||| Sbjct 309203 ATTGTAAGCCTCTCATGTCTCTTCACAGGGCCAGACTAGAGTCAAGCTCAACAGGGTCTT 309262 Query 306 CTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 365 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | Sbjct 309263 CTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGATTTCGCTAGATAGTAGGT 309322 Query 366 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 425 ||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||||| Sbjct 309323 AGGGACAGTGGGAATTTCGTTCATCCATTCATGCACGTCACTAATTAGATGACGAGGCAT 309382 Query 426 TTGGCTACCTTAAGAGAGTCAT 447 |||||||||||||||||||||| Sbjct 309383 TTGGCTACCTTAAGAGAGTCAT 309404 Score = 104 bits (114), Expect = 8e-20 Identities = 87/107 (81%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| | |||| ||||||| |||| |||| ||||||||||||||||||| | Sbjct 308656 CTTCTGCTCCGCGGGAGGTTTCTGTCCTCCCTGAGCTGGCCTTAGGACACCTGCGTTACG 308715 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTC 113 ||| |||| ||| || |||||| ||||||||||||||||| |||| Sbjct 308716 ATTTGACAGGTGTACCACCCCAGTCAAACTCCCCACCTGACGCTGTC 308762 >seq514 Length=942039 Score = 214 bits (236), Expect = 6e-53 Identities = 203/255 (80%), Gaps = 6/255 (2%) Strand=Plus/Minus Query 180 TCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACGG--C 237 || |||| ||||||| |||| ||| || ||||||||||||||| | | | || | Sbjct 863646 TCTTTGACTAAGTAACAAAATGATCAGAGTAGTGGTATTTCACCAGTAGC--AGTGGACC 863589 Query 238 TCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAAC 297 |||||||||||| | ||||||| || |||| | | | || |||||||||||||||| Sbjct 863588 TCCCACTTATTCCATGCCTCTCATGTTTCTTCAAAGGGCCAGATTAGAGTCAAGCTCAAC 863529 Query 298 AGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGA 357 || ||||||||| ||| |||| || |||||| | ||||||||| | ||||||| |||| Sbjct 863528 AGTGTCTTCTTTACCCAGTGATCCCACCAAGCTC-TTCCCTTGG-TATGGTTTCATTAGA 863471 Query 358 TAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGA 417 ||||| || ||||||||||||||| ||| |||||||||| || ||||||||||||||| Sbjct 863470 TAGTACATGAGGACAGTGGGAATCTTGTTCATCCATTCATATGCATCACTAATTAGATGA 863411 Query 418 CGAGGCATTTGGCTA 432 |||||||||| ||| Sbjct 863410 TGAGGCATTTGACTA 863396 >seq544 Length=1460021 Score = 102 bits (112), Expect = 3e-19 Identities = 77/91 (85%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 441 GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTC 500 || ||||||||||||||||| |||||| | | || |||||||||||||||| ||||||| Sbjct 552636 GACTCATAGTTACTCCCGCCATTTACCTGTGTTTCATTGAATTTCTTCACTTGGACATTC 552577 Query 501 AGAGCACTGGGCAGAAATCACATTGCGTCAA 531 || |||||||||| | ||||||| | |||| Sbjct 552576 AGTGCACTGGGCAAACATCACATCACATCAA 552546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634345117440