Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016-
01-22] 52,280 sequences; 1,673,876,332 total letters
Query= AAMG01002236.1
Length=287
Score E
Sequences producing significant alignments: (Bits) Value
seq161 95.1 2e-17
seq49 87.8 3e-15
seq11759 80.6 4e-13
>seq161
Length=187407
Score = 95.1 bits (104), Expect = 2e-17
Identities = 91/114 (80%), Gaps = 2/114 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| | |||| | ||||| | ||| || |||| || || |
Sbjct 185102 GTACGAGAGGAACCGCAGG-TTCATACCT-TTGGTGTACGCGCTTGGCTGAGGAGCCAAT 185045
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114
| |||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 185044 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 184991
>seq49
Length=351248
Score = 87.8 bits (96), Expect = 3e-15
Identities = 94/122 (77%), Gaps = 2/122 (2%)
Strand=Plus/Minus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
|||||||||||||||| | |||||| | ||||| | || | ||| || | || |
Sbjct 345821 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTATATGTGCCTGGTCGAAAGGCCAAT 345764
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120
| |||||||||||||||| |||||| | ||||||||||||||||| |||||| |||
Sbjct 345763 GGTGCGAAGCTACCATCTGAGGGATTAGGACTGAACGCCTCTAAGTCTGAATCCCGTCCA 345704
Query 121 GA 122
||
Sbjct 345703 GA 345702
>seq11759
Length=7209
Score = 80.6 bits (88), Expect = 4e-13
Identities = 89/116 (77%), Gaps = 2/116 (2%)
Strand=Plus/Plus
Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60
||||||||||||| | | |||||| |||||||| ||| | |||| || |||
Sbjct 6586 GTACGAGAGGAACAGTTGG-TTCAGA-TAATTGGTAAATGCAATTAACTGAAAAGTTAGT 6643
Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCAT 116
| ||||| ||| |||||| ||||||| ||||||||||||||||||||||| ||
Sbjct 6644 GTTGCGAAACTATCATCTGACAGATTATGACTGAACGCCTCTAAGTCAGAATCTAT 6699
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 818785105920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |