Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= AAMG01002236.1 Length=287 Score E Sequences producing significant alignments: (Bits) Value seq161 95.1 2e-17 seq49 87.8 3e-15 seq11759 80.6 4e-13 >seq161 Length=187407 Score = 95.1 bits (104), Expect = 2e-17 Identities = 91/114 (80%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||| | ||||| | ||| || |||| || || | Sbjct 185102 GTACGAGAGGAACCGCAGG-TTCATACCT-TTGGTGTACGCGCTTGGCTGAGGAGCCAAT 185045 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCC 114 | |||||||||||||||| |||||||| |||||||||||||||||||||||| Sbjct 185044 GGGGCGAAGCTACCATCTGTGGGATTATGACTGAACGCCTCTAAGTCAGAATCC 184991 >seq49 Length=351248 Score = 87.8 bits (96), Expect = 3e-15 Identities = 94/122 (77%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 |||||||||||||||| | |||||| | ||||| | || | ||| || | || | Sbjct 345821 GTACGAGAGGAACCGCAGG-TTCAGAC-ATTTGGTATATGTGCCTGGTCGAAAGGCCAAT 345764 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCATGCCA 120 | |||||||||||||||| |||||| | ||||||||||||||||| |||||| ||| Sbjct 345763 GGTGCGAAGCTACCATCTGAGGGATTAGGACTGAACGCCTCTAAGTCTGAATCCCGTCCA 345704 Query 121 GA 122 || Sbjct 345703 GA 345702 >seq11759 Length=7209 Score = 80.6 bits (88), Expect = 4e-13 Identities = 89/116 (77%), Gaps = 2/116 (2%) Strand=Plus/Plus Query 1 GTACGAGAGGAACCGCGGAATTCAGAATAATTGGTTTTTGCGGCTGTCTGACCAGGCAGT 60 ||||||||||||| | | |||||| |||||||| ||| | |||| || ||| Sbjct 6586 GTACGAGAGGAACAGTTGG-TTCAGA-TAATTGGTAAATGCAATTAACTGAAAAGTTAGT 6643 Query 61 GCCGCGAAGCTACCATCTGCTGGATTATGGCTGAACGCCTCTAAGTCAGAATCCAT 116 | ||||| ||| |||||| ||||||| ||||||||||||||||||||||| || Sbjct 6644 GTTGCGAAACTATCATCTGACAGATTATGACTGAACGCCTCTAAGTCAGAATCTAT 6699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 818785105920