Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq17630 464 2e-128 seq11759 416 9e-114 seq3211 136 1e-29 seq33652 109 2e-21 seq26247 109 2e-21 >seq17630 Length=3150 Score = 464 bits (514), Expect = 2e-128 Identities = 425/530 (80%), Gaps = 29/530 (5%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACA-AGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACC 59 |||||||||| |||||| || | | | ||| || ||||| |||||| | ||||| ||| Sbjct 1276 GTACTCATTCGAATTACGGAGCCTCTGATGAGTCCCGTATCCGTATTTTTCGTCACCACC 1335 Query 60 TCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||||||| |||||||||||| |||||||||||||||||||||||||| ||||||||||| Sbjct 1336 TCCCCGTGCCGGGATTGGGTAGTTTGCGCGCCTGCTGCCTTCCTTGGAAGTGGTAGCCGT 1395 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 1396 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTTACCCGTTATCACCATGGT 1455 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 |||| | ||||||||||||| ||||||||||||| ||||||| || || |||||| | Sbjct 1456 AGGCAGGTCACCTACCATCGAAAATTGATAGGGCAGACATTTGAAAGATCCGTCGCCGAC 1515 Query 240 TCAAGGCC--ATGCGATTCGTTAAGTTATTATGAATCACCAAGGAG---CCCCGAAG-GG 293 ||||||| |||||| || ||||||| || ||| || ||| | |||| || Sbjct 1516 ACAAGGCCGACTGCGATCAGTGAAGTTATCCAGAGTCATCACAGAGTGCAACGGAAGTGG 1575 Query 294 C--------------GTTGGTTTTTTATCTAATAAATACACCCCTTCC----GAAGTC-G 334 | ||||||| | | |||||||||| ||||| |||| ||| | Sbjct 1576 CGGAAACCACAACCGGTTGGTTCTGT-TCTAATAAATCCACCCGTTCCCTCGCGGGTCAG 1634 Query 335 GGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTAT 394 || | | ||||||||||||||||||||||| || |||||||||||||| | |||| || Sbjct 1635 GGCATAGTGGCATGTATTAGCTCTAGAATTACTACAGTTATCCATGTAGT-ATGTACGAT 1693 Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATA 454 | || ||| ||| ||||||||||||||||||||| ||||||| || | || | | || Sbjct 1694 CTAAGGAACCATAGCTGATTTAATGAGCCATTCGCGGTTTCACCGT-TTGAAGGTCTGTA 1752 Query 455 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1753 CTTAGACATGCATGGCTTAATCTCTGAGACAAGCATATGACTACTGGCAG 1802 >seq11759 Length=7209 Score = 416 bits (460), Expect = 9e-114 Identities = 406/517 (79%), Gaps = 21/517 (4%) Strand=Plus/Minus Query 5 TCATTCCAATTACAAGACCCA-AAAGAGCCCTGTATCAGTATTTATTGTCACTACCTCCC 63 ||||||||||||||| | ||| ||| |||| ||||| ||||||||||||| | Sbjct 1391 TCATTCCAATTACAAAGCATTTAAATTGCCTTGTACTGTTATTTCTTGTCACTACCTCTC 1332 Query 64 CG----TGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGT 119 |||| | |||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1331 TTATGCTGTCAGAATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTAGATGTGGTAGCCGT 1272 Query 120 TTCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGT 179 |||| ||||||||||||||||||||||||||||| |||||||| |||| | ||| ||| Sbjct 1271 TTCTTAGGCTCCCTCTCCGGAATCGAACCCTAATCCCCCGTTAACCGTCACTGCCACGGT 1212 Query 180 AGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGC 239 | |||| || | |||| ||||||| ||||||| |||||| |||||||| |||||| | Sbjct 1211 AAGCCAATACCATACCGTCGAAAGCTGATAGGTCAGAAACTTGAATGATTTATCGCCAGT 1152 Query 240 T--CAAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAA---GGAGCCCCGAAGGGC 294 | || | |||||||| | | ||||||| | |||| |||| | | || | Sbjct 1151 TTGCA---CTATGCGATTTGCTTAGTTATTGTAAATCGCCAACATTAATGCTTTAAAAAC 1095 Query 295 ----GTTGGTTTTTTATCTAATAAATACACCCCTTCCGA---AGTCGGGGTTTTTAGCAT 347 ||||||||||||||||||||| | | |||| | ||| | | ||| ||| Sbjct 1094 ATCTATTGGTTTTTTATCTAATAAATGCTTCTCTTCTAAAACAGTTGAGAATTTGCTCAT 1035 Query 348 GTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATA 407 ||||||||||||||||||||||||||||||||||| | ||||||| |||| || Sbjct 1034 GTATTAGCTCTAGAATTACCACGGTTATCCATGTAAATTTTTTATATCAAAAAAACTATT 975 Query 408 ACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGACATGCAT 467 |||| |||||||||||||| ||||||| ||||||| ||| |||||||||||| ||||| Sbjct 974 ACTGTTTTAATGAGCCATTTGCAGTTTTACTGTAT-TCTTGTTTATACTTAGACGTGCAT 916 Query 468 GGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||| |||||||||||||||||||||||| Sbjct 915 GGCTTAATCTTTAAGACAAGCATATGACTACTGGCAG 879 >seq3211 Length=282542 Score = 136 bits (150), Expect = 1e-29 Identities = 97/110 (88%), Gaps = 1/110 (1%) Strand=Plus/Minus Query 395 CAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATA 454 |||| ||| |||||||||||||||||||||||||||||||||||| | | | || Sbjct 97577 CAAAGGAACCATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTCACGCCCGTGTGTA 97518 Query 455 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 97517 CTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 97469 >seq33652 Length=1477 Score = 109 bits (120), Expect = 2e-21 Identities = 112/144 (78%), Gaps = 8/144 (6%) Strand=Plus/Minus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAA-----GGTACTATCAAA 398 |||||| |||||||| |||| ||||| |||||| || ||||| || | | |||| Sbjct 1213 GCATGTGTTAGCTCTGGAATCACCACAGTTATC--TG-AGTAACGGTGGGAGCAACCAAA 1157 Query 399 TAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTA 458 ||| ||||||||| |||||||||||| |||||||||||| | || | |||||| Sbjct 1156 GGAACCGTAACTGATTCAATGAGCCATTCACAGTTTCACTGTCACGCCTGTGTGTACTTA 1097 Query 459 GACATGCATGGCTTAATCTTTGAG 482 |||| |||||||||||||||| || Sbjct 1096 GACACGCATGGCTTAATCTTTCAG 1073 >seq26247 Length=1863 Score = 109 bits (120), Expect = 2e-21 Identities = 112/144 (78%), Gaps = 8/144 (6%) Strand=Plus/Minus Query 344 GCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAA-----GGTACTATCAAA 398 |||||| |||||||| |||| ||||| |||||| || ||||| || | | |||| Sbjct 1599 GCATGTGTTAGCTCTGGAATCACCACAGTTATC--TG-AGTAACGGTGGGAGCAACCAAA 1543 Query 399 TAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTA 458 ||| ||||||||| |||||||||||| |||||||||||| | || | |||||| Sbjct 1542 GGAACCGTAACTGATTCAATGAGCCATTCACAGTTTCACTGTCACGCCTGTGTGTACTTA 1483 Query 459 GACATGCATGGCTTAATCTTTGAG 482 |||| |||||||||||||||| || Sbjct 1482 GACACGCATGGCTTAATCTTTCAG 1459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509610362880