Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protobothrops_20mucrosquamatus_20[refseq_20GCF_5F001527695.2_202016- 01-22] 52,280 sequences; 1,673,876,332 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq3825 93.3 3e-14 seq6273 87.8 1e-12 seq3926 87.8 1e-12 >seq3825 Length=175568 Score = 93.3 bits (102), Expect = 3e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 66340 CATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAAT 66399 ||| || ||||| || |||||||| ||||||||||| || || || | ||||| || | Sbjct 100594 CATGAAGAGATCCGGGATCCAGAGCGCGTAGAAGAGGTCCCGGGCCCTCTGCTCTTCCTT 100535 Query 66400 GCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTA 66459 ||| || || || ||| ||||| ||||||||||| ||||| || |||||||| Sbjct 100534 CCCGGTGTTCTTCTTCAGGTCAAGGAAATCAAAGATGTCCAAGTGCCAGGGCTCCAGGTA 100475 Query 66460 GATGGCGAA 66468 ||||||||| Sbjct 100474 GATGGCGAA 100466 >seq6273 Length=24169 Score = 87.8 bits (96), Expect = 1e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| || || || ||||| | || || || |||||||| |||||||||| Sbjct 15236 TGGAGCGATTCAGCCAAGAAGTACAAGTCACAGAAGCACGCTGTTTCTATGGCTTCCAGA 15295 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 ||||||||||||| | || || || ||||| ||| | || || ||||| ||||| | || Sbjct 15296 TTGCCATGGAGAACATTCATTCAGAAATGTATAGTTTACTTATTGATACTTACATTAAGG 15355 Query 61376 A 61376 | Sbjct 15356 A 15356 >seq3926 Length=149525 Score = 87.8 bits (96), Expect = 1e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 61256 TGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGA 61315 |||| || ||| || || || ||||| | || || || |||||||| |||||||||| Sbjct 62876 TGGAGCGATTCAGCCAAGAAGTACAAGTCACAGAAGCACGCTGTTTCTATGGCTTCCAGA 62935 Query 61316 TTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGG 61375 ||||||||||||| | || || || ||||| ||| | || || ||||| ||||| | || Sbjct 62936 TTGCCATGGAGAACATTCATTCAGAAATGTATAGTTTACTTATTGATACTTACATTAAGG 62995 Query 61376 A 61376 | Sbjct 62996 A 62996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397314684579200