Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Python_20bivittatus_20[refseq_20GCF_5F000186305.1_202013-09-15] 39,113 sequences; 1,435,052,152 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq2488 159 5e-37 seq83 104 4e-20 seq6435 77.0 5e-12 >seq2488 Length=187404 Score = 159 bits (176), Expect = 5e-37 Identities = 181/235 (77%), Gaps = 6/235 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || |||| || |||| ||||| |||||||||| || ||| | Sbjct 12258 GTACAAAGGGCAGGGACTTAATCAATGCACGCTT-ATGACCCGCGCTTACTGGGGATT-C 12201 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-TT 119 |||||| | || ||||||||| |||||||||||||| ||||| | || Sbjct 12200 CTCGTTCACAGGTAATAATTGCAATCCCTGATCCCCATCACGATTGGGGTTCAACGGGTT 12141 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC- 178 ||||| | |||||||| ||| | | || || ||| |||| |||| |||||||| Sbjct 12140 ACCCGCAACTGTCGGCATAGGGTAGACACGCGCTGAGCCAGTCAGGGTAGTGCGCGTGCA 12081 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGC 233 |||||||| || |||||||||||||||||||||||||| |||||||| ||||| Sbjct 12080 GGCCCAGA-CACCTAAGGGCATCACAGACCTGTTATTG-CTCAAACTCAGGTGGC 12028 >seq83 Length=706952 Score = 104 bits (114), Expect = 4e-20 Identities = 107/136 (79%), Gaps = 3/136 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || ||||||| ||||| ||||| ||| ||||||||||| ||| Sbjct 694642 GTACAAAGGGCAGGGACTTAATCAACGCAAGCTT-ATGACCCGCACTTACTAGGAA-TTC 694699 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACG-ATGAAATTTCAAAGATT 119 |||||| | | || ||||||||| | |||||||||||| ||| || | | || Sbjct 694700 CTCGTTCATGGGGAAAAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAATGGGTT 694759 Query 120 ACCCGGACCTGTCGGC 135 ||||| || |||| || Sbjct 694760 ACCCGCACATGTCAGC 694775 Score = 78.8 bits (86), Expect = 1e-12 Identities = 49/53 (92%), Gaps = 0/53 (0%) Strand=Plus/Plus Query 164 GTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTG 216 ||||||||| ||||| |||| | |||||||||||||||||||||||||||||| Sbjct 694583 GTGTAGCGCACGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTG 694635 >seq6435 Length=63346 Score = 77.0 bits (84), Expect = 5e-12 Identities = 70/86 (81%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||| || |||| |||||||| ||| ||| | |||||| |||| ||| Sbjct 43988 GTACAAAGGGCAGGGACTTAATCAATGCGAGCTT-ATGGCTCACACTTACTGGGAA-TTC 43931 Query 61 CTCGTTGAAGACCAACAATTGCAATG 86 ||| || | | || |||||||||| Sbjct 43930 CTCATTCATGGGGAATAATTGCAATG 43905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751715061795