Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq570 129 1e-27 seq2048 98.7 2e-18 >seq570 Length=683497 Score = 129 bits (142), Expect = 1e-27 Identities = 155/208 (75%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 39 ATGCCCTTCACTGGGTGTGCCGGGGAGCCAGGACTTTTACTTTGAAAAAATTAGAGTGTT 98 |||| ||| | || |||| || || ||| | |||||||||||||||||||| |||| Sbjct 38914 ATGCTCTTAATTGAGTGTCCCATGGGTCCAAAGCATTTACTTTGAAAAAATTAGAATGTT 38855 Query 99 CAAAGCAGGCC-TTTGCTCGAATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTC 157 ||||||||||| | | |||||| ||| |||||||| ||||||||| | |||||| Sbjct 38854 CAAAGCAGGCCGGTCACCAGAATACTCCAGCTAGGAATAATGGAATAGGAC-TCCGGTTC 38796 Query 158 TATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTA 217 | |||||||||||| | |||| | || ||||| ||||| | |||||| | ||| Sbjct 38795 TTTTTTGTTGGTTTTCGGAACCGGGGCCATAATTAAGAGGGACGGCCGGGGGCATTCGTA 38736 Query 218 TTCAATTGTCAGAGGTGAAATTCTTGGA 245 || | |||||||||||||||||| Sbjct 38735 TTGTGCCGCTAGAGGTGAAATTCTTGGA 38708 >seq2048 Length=186082 Score = 98.7 bits (108), Expect = 2e-18 Identities = 128/173 (74%), Gaps = 3/173 (2%) Strand=Plus/Minus Query 140 GAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGA 199 ||||||||| | |||||||||||||||||||| || |||| | |||||||| ||||| Sbjct 34286 GAATAGGAC-TCCGGTTCTATTTTGTTGGTTTTCAGAACCGGGGCCATGATTAAGAGGGA 34228 Query 200 TAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTA 259 || | | ||| | ||||| | |||||||||||||||||| |||| | Sbjct 34227 CAGCCAGAGGTATTCGTATTGTGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGATGA 34168 Query 260 ACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAAGT 312 | || ||||| || |||||| ||||||| |||||||| |||||||||| Sbjct 34167 CACAGAGCAAAAGCATTTACCAAGAATGTTTT-ATTAATCA-AGAACGAAAGT 34117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915127424640