Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq70 140 5e-31 seq714 134 2e-29 seq1597 109 9e-22 seq148 98.7 2e-18 seq186 91.5 2e-16 seq515 89.7 8e-16 >seq70 Length=1683224 Score = 140 bits (154), Expect = 5e-31 Identities = 102/117 (87%), Gaps = 1/117 (1%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 ||| |||||| | | ||||| || ||||||||||||||||||| || ||||| ||||| Sbjct 1475688 CTAGTTAGCATGCCAGAGTCTCATTTGTTATCGGAATTAACCAGAAAACTCACTTCACCA 1475629 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||| Sbjct 1475628 -CTAAGAACGGCCATGCACCACCACCCACAGAATCGAGAAAGAGCTATCGATCTGTC 1475573 >seq714 Length=591541 Score = 134 bits (148), Expect = 2e-29 Identities = 180/244 (74%), Gaps = 20/244 (8%) Strand=Plus/Minus Query 15 GTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCT 74 ||||||||||| || ||| ||| | |||||||||||||| | ||| |||||||||| | Sbjct 377358 GTCAGTGTAGCATGCATGCATCCCCGGACATCTAAGGGCATTAAAGATCTGTTATTGC-T 377300 Query 75 CAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAGTC 134 ||| ||| | | ||| | || |||||||||| | |||||| || Sbjct 377299 CAATCTTGGGT-GACTGAAC----AT-----CTCTAAGAAGTTGGATGCCAACCGC--TC 377252 Query 135 GATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCAC 194 | |||| | | ||| || |||| || ||| || |||||||| ||||||||||| Sbjct 377251 G--GGGGTTGCATGCCAG---AA--TCTCATTTGTTGTCAGAATTAACTAGACAAATCAC 377199 Query 195 TCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATC 254 |||||||||||||||| |||||||||||||||||| |||| |||||||| |||| || Sbjct 377198 TCCACCAACTAAGAACTGCCATGCACCACCACCCACAGAACTGAGAAAGAGTTATCGATT 377139 Query 255 TGTC 258 |||| Sbjct 377138 TGTC 377135 >seq1597 Length=275004 Score = 109 bits (120), Expect = 9e-22 Identities = 79/91 (87%), Gaps = 4/91 (4%) Strand=Plus/Minus Query 168 GTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACC 227 || |||||||||||||| |||| ||||||||||||||||| ||||||||||| |||| Sbjct 100489 GTCATCGGAATTAACCA----AATCGCTCCACCAACTAAGAACAGCCATGCACCATCACC 100434 Query 228 CATAGAATCAAGAAAGAGCTATCAATCTGTC 258 || | ||| ||||||||||||||||||||| Sbjct 100433 CACAAAATTGAGAAAGAGCTATCAATCTGTC 100403 >seq148 Length=1310279 Score = 98.7 bits (108), Expect = 2e-18 Identities = 92/116 (79%), Gaps = 1/116 (1%) Strand=Plus/Plus Query 143 TATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAA 202 || |||||| | | | || ||| ||||| |||||||| |||||||| ||||||| || Sbjct 158254 TAATTAGCATGCCAGAGCCTTGTTGGTTATTGGAATTAATTAGACAAATTACTCCACTAA 158313 Query 203 CTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||| ||||||| || |||| |||||||||||||||||| ||||||| Sbjct 158314 CTAAGAACAACCATGCATTACT-CCCACAGAATCAAGAAAGAGCTACTGATCTGTC 158368 >seq186 Length=1203658 Score = 91.5 bits (100), Expect = 2e-16 Identities = 83/101 (82%), Gaps = 4/101 (4%) Strand=Plus/Minus Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCA-CTCCACCAACTAAGAACGGCCATG 217 ||||| ||| |||| ||||||| |||| || ||| ||||| ||||||| || ||||||| Sbjct 509003 GTCTCATTCATTATTTGAATTAATCAGATAA-TCAGCTCCATCAACTAAAAATGGCCATG 508945 Query 218 CACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||| || | |||| |||||||| |||| ||||||| Sbjct 508944 CACCACCATCC--ACAATCGAGAAAGAGTTATCGATCTGTC 508906 >seq515 Length=720368 Score = 89.7 bits (98), Expect = 8e-16 Identities = 52/54 (96%), Gaps = 0/54 (0%) Strand=Plus/Minus Query 175 GAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCC 228 ||| |||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 243385 GAAGTAACCAGACAAATCTCTCCACCAACTAAGAACGGCCATGCACCACCACCC 243332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796738788330