Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26]
7,930 sequences; 1,424,897,867 total letters
Query= AAMG01000941.1
Length=299
Score E
Sequences producing significant alignments: (Bits) Value
seq1248 134 2e-29
seq124 91.5 3e-16
seq1178 86.0 1e-14
seq2946 75.2 2e-11
>seq1248
Length=366178
Score = 134 bits (148), Expect = 2e-29
Identities = 113/139 (81%), Gaps = 0/139 (0%)
Strand=Plus/Minus
Query 155 GAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGT 214
|||||||| |||||| ||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 176043 GAAGGATCGAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCGTGT 175984
Query 215 GGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCAC 274
||||||||||||| |||||| || | ||| | | | |||||||| ||||| |
Sbjct 175983 GGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAAGTCAGAAGGATCGTGAGGCCCC 175924
Query 275 ACTTTCATGGTTTGTATTC 293
| ||||| ||| || ||||
Sbjct 175923 ATTTTCACGGTCTGCATTC 175905
>seq124
Length=2040818
Score = 91.5 bits (100), Expect = 3e-16
Identities = 83/105 (79%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 188 TGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTT 247
|||| |||||||||||||||||||| |||||||||||||| |||||| || | |||
Sbjct 1124919 TGGCCGCCACAAGCCAGTTATCCCTATGGTAACTTTTCTGACACCTCCTGCTTAAAACCC 1124978
Query 248 CGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATT 292
| | | |||||||| ||||| | |||||||||| ||||||
Sbjct 1124979 AAAAAGTCAGAAGGATCGTGAGGCCCCGCTTTCATGGTCTGTATT 1125023
>seq1178
Length=532081
Score = 86.0 bits (94), Expect = 1e-14
Identities = 50/52 (96%), Gaps = 0/52 (0%)
Strand=Plus/Plus
Query 149 GACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAG 200
||||||||||||||||||||| ||||||||||||||||||||| ||||||||
Sbjct 338581 GACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAG 338632
>seq2946
Length=83985
Score = 75.2 bits (82), Expect = 2e-11
Identities = 53/61 (87%), Gaps = 0/61 (0%)
Strand=Plus/Plus
Query 167 AGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCT 226
||| || | |||||||||||||||| |||||||||| ||||||| |||||||||||||
Sbjct 82256 AGCGACATTGCTATGAACGCTTGGCCACCACAAGCCAATTATCCCCATGGTAACTTTTCT 82315
Query 227 G 227
|
Sbjct 82316 G 82316
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 854332246080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |