Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq1248 134 2e-29 seq124 91.5 3e-16 seq1178 86.0 1e-14 seq2946 75.2 2e-11 >seq1248 Length=366178 Score = 134 bits (148), Expect = 2e-29 Identities = 113/139 (81%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 155 GAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGT 214 |||||||| |||||| ||||||||||||||||||||| |||||||||||||||||| ||| Sbjct 176043 GAAGGATCGAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCGTGT 175984 Query 215 GGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCAC 274 ||||||||||||| |||||| || | ||| | | | |||||||| ||||| | Sbjct 175983 GGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAAAGTCAGAAGGATCGTGAGGCCCC 175924 Query 275 ACTTTCATGGTTTGTATTC 293 | ||||| ||| || |||| Sbjct 175923 ATTTTCACGGTCTGCATTC 175905 >seq124 Length=2040818 Score = 91.5 bits (100), Expect = 3e-16 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 188 TGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTT 247 |||| |||||||||||||||||||| |||||||||||||| |||||| || | ||| Sbjct 1124919 TGGCCGCCACAAGCCAGTTATCCCTATGGTAACTTTTCTGACACCTCCTGCTTAAAACCC 1124978 Query 248 CGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATT 292 | | | |||||||| ||||| | |||||||||| |||||| Sbjct 1124979 AAAAAGTCAGAAGGATCGTGAGGCCCCGCTTTCATGGTCTGTATT 1125023 >seq1178 Length=532081 Score = 86.0 bits (94), Expect = 1e-14 Identities = 50/52 (96%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 149 GACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAG 200 ||||||||||||||||||||| ||||||||||||||||||||| |||||||| Sbjct 338581 GACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAG 338632 >seq2946 Length=83985 Score = 75.2 bits (82), Expect = 2e-11 Identities = 53/61 (87%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 167 AGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCT 226 ||| || | |||||||||||||||| |||||||||| ||||||| ||||||||||||| Sbjct 82256 AGCGACATTGCTATGAACGCTTGGCCACCACAAGCCAATTATCCCCATGGTAACTTTTCT 82315 Query 227 G 227 | Sbjct 82316 G 82316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854332246080