Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq124 100 9e-19 seq2946 91.5 5e-16 seq510 75.2 4e-11 >seq124 Length=2040818 Score = 100 bits (110), Expect = 9e-19 Identities = 99/128 (77%), Gaps = 5/128 (4%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| |||||| |||| ||||||| ||| |||| | |||||| |||||||||||| | Sbjct 1125058 CTTCTGCTCTGTGGGAGGTTTCTGTCCTCTCTGAGCTCGCCTTAGTACACCTGCGTTACG 1125117 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||| ||| ||| ||||||||| ||||||||| |||||| | |||| |||||| | Sbjct 1125118 GTTTGACAAGTGTACCGCCCCAGTCAAACTCCCGACCTGATACTGTC-----CCCGGAGC 1125172 Query 127 GGCCCGCG 134 || |||| Sbjct 1125173 GGGTCGCG 1125180 >seq2946 Length=83985 Score = 91.5 bits (100), Expect = 5e-16 Identities = 80/100 (80%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||| ||||| ||| ||||||| |||| |||| | ||||||||||||||||||| | Sbjct 82415 CTTCTGCTCCGTGGGAAGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACG 82474 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGA 106 |||| |||| || || |||||| |||||| ||||||||| Sbjct 82475 GTTTGACAGGTGCACCCCCCCAGTCAAACTGCCCACCTGA 82514 >seq510 Length=725132 Score = 75.2 bits (82), Expect = 4e-11 Identities = 71/88 (81%), Gaps = 7/88 (8%) Strand=Plus/Minus Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCC-GCTGATTCCGCCA--AG----CCC 331 || ||||||||||||||||| | |||||||||||| | ||||||| ||| || ||| Sbjct 714252 GAGTAGAGTCAAGCTCAACAAGATCTTCTTTCCCCTGTTGATTCCACCAGCAGGATTCCC 714193 Query 332 GTTCCCTTGGCTGTGGTTTCGCTAGATA 359 | |||||| || |||||| |||||||| Sbjct 714192 GCTCCCTTAGCAATGGTTTTGCTAGATA 714165 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635070328640