Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26]
7,930 sequences; 1,424,897,867 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq124 100 9e-19
seq2946 91.5 5e-16
seq510 75.2 4e-11
>seq124
Length=2040818
Score = 100 bits (110), Expect = 9e-19
Identities = 99/128 (77%), Gaps = 5/128 (4%)
Strand=Plus/Plus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
||| |||||| |||| ||||||| ||| |||| | |||||| |||||||||||| |
Sbjct 1125058 CTTCTGCTCTGTGGGAGGTTTCTGTCCTCTCTGAGCTCGCCTTAGTACACCTGCGTTACG 1125117
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126
|||| ||| ||| ||||||||| ||||||||| |||||| | |||| |||||| |
Sbjct 1125118 GTTTGACAAGTGTACCGCCCCAGTCAAACTCCCGACCTGATACTGTC-----CCCGGAGC 1125172
Query 127 GGCCCGCG 134
|| ||||
Sbjct 1125173 GGGTCGCG 1125180
>seq2946
Length=83985
Score = 91.5 bits (100), Expect = 5e-16
Identities = 80/100 (80%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66
||| ||||| ||| ||||||| |||| |||| | ||||||||||||||||||| |
Sbjct 82415 CTTCTGCTCCGTGGGAAGTTTCTGTCCTCCCTGAGCTCGCCTTAGGACACCTGCGTTACG 82474
Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGA 106
|||| |||| || || |||||| |||||| |||||||||
Sbjct 82475 GTTTGACAGGTGCACCCCCCCAGTCAAACTGCCCACCTGA 82514
>seq510
Length=725132
Score = 75.2 bits (82), Expect = 4e-11
Identities = 71/88 (81%), Gaps = 7/88 (8%)
Strand=Plus/Minus
Query 279 GACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCC-GCTGATTCCGCCA--AG----CCC 331
|| ||||||||||||||||| | |||||||||||| | ||||||| ||| || |||
Sbjct 714252 GAGTAGAGTCAAGCTCAACAAGATCTTCTTTCCCCTGTTGATTCCACCAGCAGGATTCCC 714193
Query 332 GTTCCCTTGGCTGTGGTTTCGCTAGATA 359
| |||||| || |||||| ||||||||
Sbjct 714192 GCTCCCTTAGCAATGGTTTTGCTAGATA 714165
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1635070328640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |