Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Thamnophis_20sirtalis_20[refseq_20GCF_5F001077635.1_202015-06-26] 7,930 sequences; 1,424,897,867 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq30 131 5e-28 seq543 86.0 2e-14 >seq30 Length=1990369 Score = 131 bits (144), Expect = 5e-28 Identities = 87/97 (90%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 51 GTCACTACCTCCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGT 110 ||| ||||||||| | || ||| ||||||| |||| |||||||||||||||||||||| Sbjct 233472 GTCCCTACCTCCCTGCATCAGGAGTGGGTAAGTTGCATGCCTGCTGCCTTCCTTGGATGT 233413 Query 111 GGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAAC 147 ||||||||||||||||||||||||||| ||||||||| Sbjct 233412 GGTAGCCGTTTCTCAGGCTCCCTCTCCAGAATCGAAC 233376 >seq543 Length=700412 Score = 86.0 bits (94), Expect = 2e-14 Identities = 51/52 (98%), Gaps = 1/52 (2%) Strand=Plus/Plus Query 453 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 495300 TACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATG-CTACTGGCAG 495350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510280225280